Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS01345

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACAACCAGGTCAACCCGCAGACCGGCACCATCCGCGGTCGCGCGGTGTTCGACAACAGCGACGGCAGCTACACCCCGGGCCTCTATGCGCGCCTGAAACT GGTGGGCAGCGGCACCTACTCCGCCGTGCTGATCAACGACGAAGCGGTGGGTACCGACCTGGGCAAGAAGTTCGTGCTGGTGATGGACGCCGACAACAAG CCGGCGTACCGCGCCGTCGAGCTGGGGCCGAAGATCGAAGGCCTGCGCATTGTGCGCAACGGCCTGAACAAGGACGACACCATCATCGTCAAGGGTCTGC AGCGAGCCCGTCCGGGCGCGCCGGTCAGCCCTGAAGTAGTGCCGATGGCCAGCAAGGAAACCCTCGCCGCCCTGGCGCAACAACGACAAGCCCTGGAAGC CAGCAACCTGCCTCAAGTCGCCCCCGCCAAGGGCGCGCCTGAAGCGGCTGCGAAACTGGCCAGCGCTGCGACTCCACGCGGTTAAGGGAAAAGACTCAAG
DNA Sequence for Gene
>PCH03S_RS01345
ATGAATTTCTCCCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTGCTGTCGCTGCTGATCCTGATCGCCGGCTCCATCTCGCTGTTCCAGCTGCCCA TCAGCGAATACCCGGAAGTGGTACCGCCGACCGTGGTGGTACGCGCCAACTTCCCGGGCGCCAACCCGAAAGTCATCGGCGAAACCGTGGCCGCGCCCCT GGAGCAGGCCATCACCGGCGTCGAGAACATGCTCTACATGTCCTCGCAGTCCACCGCCGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGTACC GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTGACCCGGACCGAGCCCAAGCTGCCTGAAGAGGTGACGCGCATCGGTATCACTGTGGACAAGG CATCGCCCGACCTGACCATGGTCGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCATCCTCAATATCAAGGATGA GCTGGCGCGGCTGGGCGGCGTCGGCGACGTGCAGCTGTTCGGCATGGGCGACTACTCGCTGCGGGTCTGGCTCGATCCGAACAAGACCGCTTCGCGCAAC CTCACCGCCACCGACGTGGTCACCGCCATTCGCGAGCAGAACCGCCAGGTCGCCGCCGGTACCCTGGGCGCCCCGCCCGCGCCGAGCGCCACCAGCTTCC AGCTGTCGGTCAACACCCAGGGTCGCCTGGTGACCGAGGAAGAGTTCGAGAACATCATCATTCGCGCAGGCGACAACGGCGAGATCACTCGCCTGAAAGA CATCGCCCGGGTCGAGCTGGGCTCCAACCAGTACGCCCTGCGTTCGCTGCTGAACAACCAGCCGGCGGTGGCGATCCCGATCTTCCAGCGCCCAGGCTCC AACGCCATCGAGATCTCCAACGAAGTGCGGGCCAAGATGGCCGAGCTGAAGCAGAGCTTCCCGCAAGGCATGGACTTCAGCATCGTCTACGACCCGACCA TCTTCGTCCGCGGTTCCATCGAGGCCGTGGTGCATACCCTGTTCGAAGCACTGATCCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATCCCGCTGGTGGCGGTGCCCGTCTCGCTGATCGGTACCTTCGCCGTGATGCATCTGTTCGGCTTCTCGCTCAACGCCCTGTCGCTGTTCGGG CTCGTCCTGGCCATCGGTATCGTGGTGGACGACGCGATCGTGGTGGTGGAAAACGTCGAGCGTAATATCGGCCTCGGCCTGAACCCGGTGGAAGCCACCA AACGCGCCATGCGCGAAGTGACCGGGCCGATCATCGCCACCGCCCTGGTGCTCTGCGCGGTGTTTGTGCCGGCGGCCTTCATCAGCGGCCTGACCGGGCA GTTCTACAAGCAGTTCGCCCTGACCATCGCGATCTCCACGGTGATCTCGGCCTTCAACTCCCTGACCCTGTCGCCGGCCCTGGCCGCGGTCTTGCTCAAG GACCACCACGCACCGAAGGACCGCTTCTCCAGGTTCCTCGACAGGTTGCTGGGTGGCTGGCTGTTCAAACCCTTCAACCGCTTCTTCGACCGTGCCAGCC ATGGCTACGTCGGCACCGTGCGCCGGGTGATCCGTGGCAGCGGCATCGCCCTGTTCCTCTACGCGGGCCTGATGGTGCTGACCTGGTTCGGCTTCGCCCA CACGCCGATGGGCTTCGTCCCGGCCCAGGACAAGCAATACCTGGTGGCCTTCGCCCAACTGCCGGACGCCGCGAGCCTGGACCGCACCGAGGACGTGATC AAGCGCATGTCCGACATCGCCCTGAAGCAACCGGGCGTGGAAAGCGCGGTGGCCTTCCCGGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACAACG GCATCGTGTTCGTGACCCTCAAGCCCTTCGACGAGCGCAAGGACCCGAGCATGTCCGCCGGGGCCATCGCCGGCGCCCTGAACGGCAAGTACGCCGATAT CCAGGAAGCCTACATGGCGATCTTCCCACCGCCGCCGGTACAGGGCCTGGGGACCATTGGCGGTTTCCGCCTGCAGGTCGAGGACCGCAGCGGCATGGGT TACGAAGAGCTGTATAAGGAAGTGCAGAACGTCATTGCCAAGAGTCGCAGCGTGCCGGAACTGGCCGGGCTGTTCACCAGCTATCAGGTCAACGTGCCTC AGGTCGACGCGGCTATCGACCGGGAAAAGGCCAAGACCCACGGCGTAGCCATCAGCGATATCTTCGACACCCTGCAGGTCTACCTGGGCTCGCTGTACGC CAACGACTTCAACCGTTTTGGCCGTACCTACCAGGTCAACGTCCAGGCCGAACAGCAGTTCCGTCTCGAGGCCGAGCAGATCGGCCAGCTGAAAGTACGC AACAACAAGGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGTGACACCGCCGGTCCCGACCGCGTGATGCACTACAACGGCTTCGTCACCGCGG AAATCAACGGCGCGGCCGCACCGGGCTACAGCTCCGGCCAGGCGGAAGCGGCGATCGAGAAACTGCTCAAGGAAGAACTGCCCAACGGCATGACCTACGA ATGGACCGAGCTGACCTACCAGCAGATCCTTGCCGGTAACACCGCGCTGTTCGTCTTCCCGCTCTGCGTGCTGCTGGCGTTCCTGGTACTGGCCGCGCAA TACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCGCCGGGGTGATCCTGTCCGGTGGCGACAACAACA TCTTTACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCCTGTAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGACAAACAGGAAGAAGGCCTCGA CCCGCTGGCCGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGTGTGGTGCCCCTGGTGTTCTCC AGCGGCGCCGGTGCGGAAATGCGTCATGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGCCTGCTGCTGACCCCGGTGTTCT ACGTCCTGATCCGCAACTATGTGGAGCGCAGCGAAGCCCGCAAAGCGACCCGTGCCCTGAAACTGGAGGCGCAACAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCTGAAAGTCTTCCTGCCGAGCTTGCTGGTACTGGCCCTGAGTGCCTGTGCCGTCGGCCCGGACTATCAGACCCCGACGACCGAGGCGGCCAACATCAC GGCCGCCACCGATGGCGCCGCGGGCCAGAAGAATTTCGACCGAGCGCGTTTCGAAGGCATCTGGTGGCAACAGTTCGACGACCCGGTGCTCAACCAGCTG GTGACCCGGTCCCTGCAGGGCAACCGTGAGTTGCGCGTGGCCTTCGCCCGCCTGCGGGCCGCCCGGGCGATTCGCGACGACGCCAGCAACGATGCGATGC CGACCATCACCAGCCGCGCCAGTAGCGACCTGGCCAAGGGTCAGATCCCCGGCCAGACCACTCGCCGGGTCAACAGCGAACGCTACGACCTGGGCCTGGA CATGGCCTGGGAACTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAAGCCAGCGAAGCCGACCAGCAGGCCGCCGAGGCCGACCTCTACCAGCTGCAA
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSQFFISRPIFAAVLSLLILIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGTLGAPPAPSATSFQLSVNTQGRLVTEEEFENIIIRAGDNGEITRLKDIARVELGSNQYALRSLLNNQPAVAIPIFQRPGS NAIEISNEVRAKMAELKQSFPQGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLNPVEATKRAMREVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK DHHAPKDRFSRFLDRLLGGWLFKPFNRFFDRASHGYVGTVRRVIRGSGIALFLYAGLMVLTWFGFAHTPMGFVPAQDKQYLVAFAQLPDAASLDRTEDVI KRMSDIALKQPGVESAVAFPGLSINGFTNSPNNGIVFVTLKPFDERKDPSMSAGAIAGALNGKYADIQEAYMAIFPPPPVQGLGTIGGFRLQVEDRSGMG YEELYKEVQNVIAKSRSVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAISDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRLEAEQIGQLKVR NNKGEMIPLATFIKVSDTAGPDRVMHYNGFVTAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTYEWTELTYQQILAGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIAGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVERSEARKATRALKLEAQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site