Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS09645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGGCCGCGCCTGGACAGCCGCTACCAGCACAGCGACCAGGGCGCGAGCTTTCGCAAGTTGATGGACGCGATCCGCCAGGTGCTGTCGATGGTGCTCG AACAGCACGCCATCGAACTGGTGCTGCAGGCGCGTCAGTACGGGATCATCGTGTCGCCGTTGCACGACCACAAGCTGCTGGGCTCGGCCTCGTTCGTCCT GGCCGCCAGCGCCAACTGCGATTCCGAAGAACTGCGCCATCGCTTGCCGGCGCACCTCAAGGTCGGCCCGGTGGAGCGCATTCGCCAGCTGGTCAACCTG CACCTGCCGGGGATCAAGGTCAAACCCTTGCCGGTGGCGCCACGGCAGATCGCGTTCCACTCCAACAAAACCTATTTCATCCTCGAACTCAGTTCCGAAG ACCTGGCGCAACTGGAGCGTTCCGGCGGTTTCGCCTTCCACGTGTCCGGCGAATTCGCCGAGCTTGAACTGAAATTCTGGGCCATCAGGAACTGACCGAC
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| DNA Sequence for Gene |
>PCH03S_RS09645
ATGATCAAGGACATGGAACACAACCAGGACGACAAGACCGTCCTGCTCGATCGCCAGGGCCATGGCCCGGCGCAGAGTCCGCTGACCGATTTCGCCGCGC CGCCGCGCTTCGAGCAACTGGAAGAACGGATGATCTACGCCGCGCGCCTGCGCCCGGCCGAGGCCTTCAACATCAGCCTGAACGCGCTGGTGGCGGCGGC CTCCGACCTGTTGTCGGAAGTGGTGCGCCTCAAGCACAGCGACACCCGCGAAGACCTGTACGCGCTCAACGAGCGCCTGACCTCGGCCCTGAAACTGTTC GAGGTGCGCGCCCTGCACAACGGCGCCGAAAGCAGCCAGGTCATGGCCGCCCGCTACGTGCTGTGCACCGTGGTCGACGAGGCGGTGGTCACCACCCCCT GGGGCAATGAAAGCGAGTGGTCGCAGATGAGCCTGCTCAGCAGCTTCCACAACGAGACCTTTGGTGGCGAGAAGTTCTTCCAGCTGCTGGACCGGTTGTC GAAGAACCCGGTCAAGCACCTGCCGATGCTGGAACTGATGTACCTGTGCCTGTCGCTGGGCTTCGAGGGCAAGTACCGGGTCATGGCCCGCGGCATGCTC GAGCTCGAAGGCATCCGCGATGCGCTGTACCGGCAGATCCGCCAGCTGCGTGGCGACGTGCCGCGCGAGCTGTCGCCGCATTGGGAAGGCCTGCACGACA AGCGCCGCAGCCTGGTGCGCATCGTGCCGTGGTGGATGGTCGCGCTGTTCACGGTGGTCTGCCTGGTGGTGATGTATTCGGGGTTCGCCTGGGTTCTGGG CGAGCAGCGCGAGACCGTTCTGCAACCTTATCAGCAGCTTGACCCGGCCGTGGTCCAGCCCCAGCCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACAGGGACGTGTGATGAAAAACTTCTTCAAGAAAGTCGGCGCCTTCCTGCGCAAGACGTGGGTCTGGACGCTGTTGCTGGTGCTGTTCGTGGCGCTGCT GGTGTGGTTCGTCGGGCCGCTGCTGGCGGTCAACGACTACAAATTCTGGGAAAGCGCGACCTCGCGCCTGCTGACCATCAGCGTGCTGTTCCTGATCTGG GGCCTGACCATGGTCTTCGTCAGCTGGCGCGCCGGGATCCGCAAGAAAGAAATGGAAGACAGCGAAGACGGCCAGGAACGCCTGCGCCGTGAAGAGCTGA TCGACGAGGAACAGAAAGAGCTGCGCAGCCGCTTCAAGGAAGCCATGCGCACCCTCAAGACCTCCAGCCTGTACCGCGGGCGCAGCGAGCGCTGGCGCAA CGACCTGCCCTGGTACCTGCTGATCGGCCCGCAGAGCAGCGGCAAGACCAGCCTGCTGGACTTCTCGGGCCTTGAGTTCCCGATCAACAAGATCGACCGC
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| Amino Acid Sequence |
>type IV / VI secretion system protein, DotU family
MIKDMEHNQDDKTVLLDRQGHGPAQSPLTDFAAPPRFEQLEERMIYAARLRPAEAFNISLNALVAAASDLLSEVVRLKHSDTREDLYALNERLTSALKLF EVRALHNGAESSQVMAARYVLCTVVDEAVVTTPWGNESEWSQMSLLSSFHNETFGGEKFFQLLDRLSKNPVKHLPMLELMYLCLSLGFEGKYRVMARGML ELEGIRDALYRQIRQLRGDVPRELSPHWEGLHDKRRSLVRIVPWWMVALFTVVCLVVMYSGFAWVLGEQRETVLQPYQQLDPAVVQPQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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