Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS09385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCCCTCGCCACTGCGCAGCAGGGTGCCGACCCGCTCCTTCATCTCCCGCGCGGCCTTGTTGGTGAAGGTCATGGCGACGATGTACTGCGCGCGAATG CCGCAGTTCTGGATCAGGTGGGCGATCTTGCGCGTGATTACACTGGTCTTGCCGGAGCCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACATAGTTCA CGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATGACGAAAAAAGGGGTCTGTAACGAAATGGGCGGGCATTTTAACAGGCTGGACGGATTCTGCTGCTC TCTCCGACTTGTGACGCAGCACGCTATCTAAATTTGCCGGTTTTGATACTTTCCCTCAGGATGCGCGCTGAATATGCGTCTAATGTTCGAGTTAGAGCGA TACAAGAAACCGCGTTTGATAATCAATATCATTTGTCATTGTTTATCCACGCGTCATAATGCCCGCCGCCAACTTCTATTACAGAGTCTAGGGAGCTAGC
|
|
| DNA Sequence for Gene |
>PCH03S_RS09385
TTGTCCAAGCCTGTCGAACCCTTGCGCTTGCTGCTGCTGGCCGAAGAGCCGGCGTGGGCAGCGTTGTTGCGCGAGTGTCTCGCTCCGTTGGGAGACTCGG TGGTGCTGATCAGTGCGCCGACCTGGGAATCTGTCAGCCGTCTGTTCGATGAAGACCGCTCTGCGATTCTGTTGACCGTTCCCCAACTGCAACCGGCTCC CGGTCGTTGCAGCCTGCCCACGGTATTACTGTTGGAGCAGGAGCCGCTGAATACGCCGGCCGGCGCCAGCGACTGGCTGGTGAATAAAAGCCTCAGTACC GATACGGTGCGCCGTTGCCTGCGCCATGTGCGTGAGCGCGGGGTGCTGGAAAGCACCCTGTTGCGCCTGGCCGAGCAGGACCCCTTGACCGGCATCGCCA ACCGCCAGGGTTTCCAGACCCTGCTGGCGGCGCGCCTGGCGGAAAACGAAGGGCGCGGGCTGGCGCTGGGGCACCTGGACCTGGACAACTTCCGGCATGC CAACGATGCGCTGGGCCACCAGGCCGGCGACCGGTTGATCCTGCAAGTGGTCTCGCGGCTCAAGAGCCAGCTTGAGGCCGGGGACCAGCTGGCGCGCCTG GGCAGCGACGAGTTCGCCCTGCTGATCGATACCCGCCGGGCACCGCAACGCGCCGAGTGGATGGCCGAGCGCATCGCCGAAGTCATGGCCGAGCCGTACT GGATCGACGGTGAAAGCCTGCTGATCGGCTGCAGCCTGGGCATCGCCCACGCCAGGGCGAATGCCGGCGCCGACCCGCTGATGTGGCACGCGCACATCGC CATGCAGCAGGCCAAAAGCACCCAGGGCTGTACCTTTCATATTTTCAACGAACGCATCAACCGCAATGCCCGCAGCCTCGCCGACCTGGAAAGCGAGCTG CGCCGGGCCTTGCGCCGCGACGAGCTGGAGCTGCACTACCAGCCGCGCCTGAACCTGCATGACGGGCAGATCGTCGGCCTCGAAGCCCTGGTGCGCTGGC GCCATGGCGAACGCGGGCTGTTGCCGCCGAGCGAGTTCGTGCCGCTGGCCGAGCAGAGCGGTTTGATCGTGCCGCTGGGCTACTGGGTGATCTCCCGGGC GCTGCGCGACATGCAGGCCCTGCGCGAACGCGGCCTGGCGCCGCTGCACATGGCGGTCAACCTGTCGTTCCGCCAGTTCCAGGACAGCCAGCTGCTGTCG ACTCTCAGCCGGCTGATTGTCGAGCGGGGTGTCGAGGCGCAATGGCTGGAATTCGAGCTGACCGAAACCGCGGTGATGCGCCGCAGCGACCTGGTCAAGC AGACCATGGATGCGCTGGGGCGTCTGGGAGTGCGGTTTTCCCTGGACGACTTCGGCACCGGGTTTTCGTCTTTCGTGCACCTCAACAGCCTGCCGATTGC CCTGCTCAAGATCGACAAGAGCTTCGTCGGCGGCATGGAGCAGCGCGAAGAGAACCGCAAGCTGGTGCACGCCATGATCAACCTGGCTCACAACCTCCAT CTCGAGGTGGTGGCCGAGGGCGTGGAAACCCCCGAGCAGCTGGCCTTGCTGCGCAGCTTTGGTTGCGATCAGGCGCAGGGCTACCTGATCAGCAAGCCGC TGCCGCTGGCGGAACTGGTGGAATACCTGACGTTCGGCGCAAGCCAGCAAGTCCTGGTCGGCGAGGTCAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGCATCCCGCTGTAGCGGCAGGAGCCCTCGAGCTCCTGCAGCTACAGGGAATCCTGGGCGGTCTGGAAGTTATCCCGTGGCGCGGGTTCCGCGCCTTCC CGGCGAATCATCCGCCGCATCTTCCATTCGAAGGCCAGGGTCAGGCTGATGGCGGCGCACGCCAGCCCCGATGCCAGGCCCCACCATACGCCGGTCGCGC CCCAGCCCAGGGTGAAGGCCATCAGCCAGGCCGCCGGCGCACCGATCAGCCAATAGCAGCCCAGGCCCACGAGGAAGGTGGTCTTGGCGTCCTTGAGCCC GCGAATCGCGCCCATGGCGATGGTCTGCGTGCCGTCGAACAGCTCGAACCAGGCCGCGACCGCCAGCAGGCTGACCGCCAGGTTGATCACATCGCGAAAG GCCGGGTCGTCATGGTCGAGGAACAGCCCGATCAGCTGGTTCGGCAGCAGCCAGAAAATCATGGCGAAACCCAGCATGGCCGCGCCGCCAAAGGCGATCC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MSKPVEPLRLLLLAEEPAWAALLRECLAPLGDSVVLISAPTWESVSRLFDEDRSAILLTVPQLQPAPGRCSLPTVLLLEQEPLNTPAGASDWLVNKSLST DTVRRCLRHVRERGVLESTLLRLAEQDPLTGIANRQGFQTLLAARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERIAEVMAEPYWIDGESLLIGCSLGIAHARANAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL RRALRRDELELHYQPRLNLHDGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLAPLHMAVNLSFRQFQDSQLLS TLSRLIVERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEQREENRKLVHAMINLAHNLH LEVVAEGVETPEQLALLRSFGCDQAQGYLISKPLPLAELVEYLTFGASQQVLVGEVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|