Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS11160 (proY)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGGCGCTGTCCCATCCGCACTCGGTGGACAGCCTGCCGACTTCCGCCAACCAGGAAGACCATGTGTCCATGGCGCCCGCCGCTGGCAAGCGCCTGTGG GAAATGGCCGAAAACACCCGTGGCATCCTCGCCGTGGAATGGCTGGCAGCCTGCCAGGGCCTGGACCTGCGTGACGGGCTGAAGACCTCGACCAAGCTGG AAAAGGCCCGCGCTACCCTGCGTAGCAAAGTGCCGTTCTACGAGAAGGACCGCTTCTTCGCCCCGGACATCAACGCCGCGAGCGAACTGCTGGCGTCCCG TTGCCTGAATGAGCTGCTGCCGGCCAAGTTGCTGCCGAGCCTGTAACCCCATGCCGGTAGCCGCTGCTGAGGTACGAAGCTGCGAAGCGGTCTGCGAGAC CGCCGTCGGGGGCTGCTGTGCAGCCCATCGCAGCCTCGTACCTCGGCAGCGGCTACAGGTGGTTCCGGTTTTCTCCGATAAAAATAATTAGGAACGAGAA
|
|
| DNA Sequence for Gene |
>PCH03S_RS11160
|proY
ATGCAACAGCAAGCTCAAGGATTGAAACGCGGGCTGTCCGCCCGACATATTCGCTTCATGGCGCTGGGGTCGGCGATCGGCACCGGGCTGTTCTATGGTT CTGCCTCGGCCATCCAGATGGCCGGTCCCGCGGTCCTCCTGGCCTACCTGATCGGTGGTGCCGCGGTGTTCATGGTGATGCGCGCGCTGGGCGAGATGGC CGTGCACAACCCGGTGTCCGGCTCGTTCGGCCACTACGCCAGCAATTACCTGGGGCCGTTGCCGGGATTTATCCTCGGCTGGACCTATGCCTTTGAAATG ATCATCGTCTGCCTGGCCGACGTCACGGCCTTCGGCATCTATATGGGCTTCTGGTTTCCGGAAGTGGCGCGCTGGGTCTGGGTGCTCGGCATCGTGTTCC TGATCGGCGGCCTCAACCTGTGCAACGTCAAGGTCTTCGGCGAGATGGAGTTCTGGCTGTCGCTGCTGAAAGTCGGTGCGATTGTCGCGATGATCCTCGC CGGCTTCGGCATCATGCTGTTCGGCATCGGTTCGGCCAGCAGCGAGCAGGCCACCGGGGTGGCCAACCTCTGGGCCCACGGCGGTTTCATGCCTAACGGC ATCGGCGGCCTGATCGCCTCGTTCGCGGTGGTGATGTTCGCCTTTGGCGGCATCGAGATCATCGGTATCACCGCCGGTGAAGCCAAGGACCCGCAGCGGG TCATCCCCAAGGCGATCAACGCGGTGCCGATGCGCATCCTGCTGTTCTATGTGCTGACCCTGTTCGTGCTGATGGCCATCTATCCATGGCCGCAGATCGG CAGCCAGGGCAGCCCGTTCGTGCAGATCTTCGACAACCTGGGCATCGGCTCGGCGGCGACCATCCTCAATATCGTGGTGATCTCGGCGGCGGTGTCGGCG ATCAACAGCGACATCTTCGGCGCCGGACGCATGATGTACGGCCTGGCCCAGCAAGGGCAGGCGCCAAAAGGCTTTGCCCAGCTGTCGAAACACGGCGTGC CGTGGATGACCGTGGTGGTCATGGGCGCCGCGCTGCTGGGCGGTGTGCTGCTGAACTACCTGATTCCGGAAAACGTGTTCCTGCTGATTGCCTCGATCGC CACTTTCGCCACGGTCTGGGTCTGGCTGATGATCCTGGTCACCCAGGTGGCCATGCGTCGCTCGATGAGCGCCGAGCAGGTCGCCCAACTGAAATTCCCG GTGCCGTTCTGGCCCTGGGCGCCGGCAGCCGCCATCGTGTTCATGCTGTTCGTCTTCGGCGTGCTGGGTTACTTCCCGGAGACCCAGGCGGCGCTGGCGG TGGGCGCGGTGTGGATCGTGCTGCTGGTGATCGCTTATCTGTTGTGGGTCAAGCCTGCCGCCGGTCAGGCGGTCCAGGTACACCGCGACCCTTCTTTGTC CCATCGATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTAACGGAGGCCTCGGATGAAAACTCTCTGGCAACACTGCCACGTCGCAAGCATGGCGCAAGGCGCTTACTCGATCATCGAGGATGCCGCCATCGTGACG TCAGGAGCGCTCATAGAGTGGATCGGCCCGCGCGACCAGGTTCCGGCCGGCGACTATGCCGAGCGGCATGACCTGGCGGGGGCCTGGGTCACCCCGGGCC TGATCGACTGCCACACCCACACGGTGTTCGGCGGCAACCGCAGCGGCGAATTCGAGCAACGCTTGCAAGGGGTGAGCTACGCCGAAATCGCCGCCGCCGG TGGCGGTATCGCCAGCACCGTGCGGGCCACCCGTGCGGCGAGCGAGGATGAACTGTTCGACAGTGCCCGCAAGCGCTTGAAAAGCCTGCTGCGCGACGGC GTGACCAGCGTCGAGATCAAGTCCGGCTACGGCCTGGACCTGGCCAGCGAACGCAAGATCCTGCGGGTGATCCGGCGCCTGGGCGCCGAGCTGCCGGTCA
|
|
| Amino Acid Sequence |
>permease
MQQQAQGLKRGLSARHIRFMALGSAIGTGLFYGSASAIQMAGPAVLLAYLIGGAAVFMVMRALGEMAVHNPVSGSFGHYASNYLGPLPGFILGWTYAFEM IIVCLADVTAFGIYMGFWFPEVARWVWVLGIVFLIGGLNLCNVKVFGEMEFWLSLLKVGAIVAMILAGFGIMLFGIGSASSEQATGVANLWAHGGFMPNG IGGLIASFAVVMFAFGGIEIIGITAGEAKDPQRVIPKAINAVPMRILLFYVLTLFVLMAIYPWPQIGSQGSPFVQIFDNLGIGSAATILNIVVISAAVSA INSDIFGAGRMMYGLAQQGQAPKGFAQLSKHGVPWMTVVVMGAALLGGVLLNYLIPENVFLLIASIATFATVWVWLMILVTQVAMRRSMSAEQVAQLKFP VPFWPWAPAAAIVFMLFVFGVLGYFPETQAALAVGAVWIVLLVIAYLLWVKPAAGQAVQVHRDPSLSHR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|