Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS10585
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACTGATGGCGCGGGTCAAGGCCGTGCTGCGTCGCCAGTCGGCGCCGGTGCCGGGTGCGCCGGGCAGCGAAGACGAAAACGTCACCTTCGGCGACTACG AGCTGTCCCTGGCCACCCGCGAGCTCAAGCGCGGCGCCGAAGTGCACATGCTCACCACCGGTGAGTTCGCGGTGCTCAAGGCCCTGGTGATGAACGCTCG CCAGCCGCTGACCCGCGACAAGCTGATGAACCTGGCCCGTGGCCGCGAGTGGGATGCCCTGGAGCGTTCCATCGACGTGCAGATCTCCCGCCTGCGTCGG ATGATCGAGCCCGATCCGTCCAAGCCGCGTTATATCCAGACGGTCTGGGGCGTGGGTTATGTGTTCGTGCCGGATGGCACCACCACCAAGTGACCGATGA TTTGTAGGAGCGAGCGCCCGGGCCGGCAAACGACCCGGGCGCTCGCATTCCGCAACTCTGCGAGCGCGACTCGCTCCTGCAAAGCGTGTAATGGCTGTTT
|
|
| DNA Sequence for Gene |
>PCH03S_RS10585
ATGAAAACCCCGCTGTGGTTCCCGCAAAGCTTCTTCTCCCGCACCCTCTGGCTGGTGCTGATCGTGGTGCTGTTCTCCAAGGCGCTGACCCTGGTTTATC TGCTGATGAACGAGGACGTGCTGGTGGACCGCCAGTACAGCCACGGCGTGGCCCTGACCCTGCGCGCCTATTGGGCCGCCGACGAATCCAACCGCGACCA GATCGCCGAGGCCGCCGGGCTGATCAAGGTGGTCGGCAGCGGTGTGCCGGCGGGCGAGCAGCATTGGCCCTATAGCGAGATTTATCAGCGGCAGATGCAG GCCGAATTGGGCGCCGACACTGAAGTGCGCCTGCGCATGCACGCCCCGCCGGCGCTCTGGGTGCGCGCGCCGAGCCTGGGTGATGGCTGGCTGAAAGTGC CGCTGTATCCGCATCCGTTGCGGGGGCAGAAGATCTGGAGCGTGCTCGGCTGGTTCCTCGCGATCGGCCTGTTGTCCACGGCTTCGGCATGGATCTTTGT CAGCCAGCTCAACCAGCCCCTCAAGCGCCTGGTCTACGCCGCCCGGCAACTGGGCCAGGGGCGTAGCGTACGCCTGCCGATCAGTGACACGCCGAGCGAG ATGACCGAGGTGTACCGCGCCTTCAACCAGATGGCCGAGGATGTGGAACAGGCCGGGCGCGAACGCGAGCTGATGCTGGCGGGGGTGTCCCACGACCTGC GCACGCCGTTGACTCGCCTGCGCCTGTCGCTGGAGTTGATGGGCAGCCACAACGACCTGACCGACGACATGGTCCGCGACATCGAAGACATGGACGCGAT TCTCGACCAGTTCCTGGCCTTTATCCGCGACGGCCGCGACGAGTCGGTGGAGGAGGTTGATCTCAGTGACCTGGTGCGTGAAGTGGCGGCGCCCTACAAC CAGAACGACGAAAAGGTGCGCCTGCGCCTGGAGCCGATCCCGCCGTTCCCGTTGCGCCGGGTATCGATGAAACGCCTGCTGAACAACCTGATCGGCAACG CGCTGAACCACGCGGGGACGGAAGTCGAAGTGGCGGCCTATGTGTCGGGCGACACCAGCGCGCCTTATGTGGTGCTGAGCGTGATGGACCGTGGCGCGGG CATCGACCCGTCGGAGCTGGAGGCGATCTTCAACCCCTTCACCCGCGGCGACCGTGCCCGGGGCGGCAAGGGTACCGGCCTGGGCCTGGCCATCGTCAAG CGGATCGCCTCGATGCACGGCGGCAATGTCGAACTGCGCAACCGCGCCGATGGCGGCCTGGAGGCGCGGGTGCGGTTGCCGTTGGGGTTGTTGTTGCCCA GGGATGCGGTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGCAGCTACAAGCGGCAAGCTACAAGCTGCAAGTGAGGAGTCGCTTTTCTCTTGCAGCTAAAAGCTTGCCGCTGCCCTTAACCCTTGCCCTTGGTCCGG GTCATGTTCGGGCCACCGTTTTTCTCGATGTGCTCGATGATGATCCCCGCCACGTTCTTGCCGGTGGTGGTCTCGATGCCTTCCAGGCCAGGCGAGGAAT TCACTTCCATCACCAGCGGCCCGTGGTTCGAACGCAGGATATCCACGCCCGCGACGCTCAGGCCCATGACCTTGGCCGCGCGCAGGGCGGTCATGCGTTC TTCCGGAGTGATCTTGATCAGGCTGGCGCTGCCGCCACGGTGCAGGTTGGAGCGGAACTCGCCGGGCTTGGCCTGGCGTTTCATCGCGGCAATCACCTTG TCGCCGACCACGAAGCAGCGGATGTCGGCGCCGCCGGCTTCCTTGATGTACTCCTGGACCATGATGTTCTGCTTCAGGCCCATGAAGGCCTCGATCACCG
|
|
| Amino Acid Sequence |
>ATPase
MKTPLWFPQSFFSRTLWLVLIVVLFSKALTLVYLLMNEDVLVDRQYSHGVALTLRAYWAADESNRDQIAEAAGLIKVVGSGVPAGEQHWPYSEIYQRQMQ AELGADTEVRLRMHAPPALWVRAPSLGDGWLKVPLYPHPLRGQKIWSVLGWFLAIGLLSTASAWIFVSQLNQPLKRLVYAARQLGQGRSVRLPISDTPSE MTEVYRAFNQMAEDVEQAGRERELMLAGVSHDLRTPLTRLRLSLELMGSHNDLTDDMVRDIEDMDAILDQFLAFIRDGRDESVEEVDLSDLVREVAAPYN QNDEKVRLRLEPIPPFPLRRVSMKRLLNNLIGNALNHAGTEVEVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRARGGKGTGLGLAIVK RIASMHGGNVELRNRADGGLEARVRLPLGLLLPRDAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|