Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS13980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGAGCCGAAAACCGGCTTCATGCTCATCGACACCCTGCTGGCCGATGACACCAGCGCCTTCTTCGACGCCCTGCACCACCTGATCCTGCCGGCCATCG TGCTCGGCACCATTCCGCTGGCGGTGATCGCGCGGATGACCCGTTCCTCGATGCTCGAAGTGCTGCGCGAAGACTACATCCGCACCGCCAAGGCCAAGGG CCTGTCGCCCGCCCGCGTGGTGTTCGTCCACGGTCTGCGCAACGCGCTGATCCCGGTGCTGACCGTGGTCGGCCTGCAAGTCGGCACCCTGCTGGCCGGC GCGGTCCTGACCGAAACCATCTTCTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATCGGCGCCCGGGACTACCCCGTGGTGCAGAACGGCATCC TGTTGATCGCCTGCCTGGTGATCCTGGTCAACTTCGTGGTGGACATCCTCTACGGCTTTGCCAACCCACGCATTCGCCACCAGCGCTGAGGACAATACTC
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| DNA Sequence for Gene |
>PCH03S_RS13980
ATGAGCACTCCAACCTCCTCAGTAGCCGTATCCGCCGTGGCCGTGGATCAAAGCCTGCTGTACCCCTCGCCGTACAAGGAATTCTGGCAGGCGTTCTCGC GCAACAAGGGCGCGGTGGCCGGCCTGCTGTTCATGCTGCTGGTGATCTTCTGCGCGATCTTCGCGCCCTGGGTCGCCCCGCATAACCCGAGCGAGCAATA CCGCGACTTCCTGCTGACCCCGCCGGTCTGGCTCGAAGGCGGCCAATGGCAATTCATCCTCGGCACCGACGAACTGGGCCGTGACCTGCTGTCGCGCCTG ATCACCGGTTCGCGCCTGTCGCTGCTGATCGGCCTGTCGTCAGTGGTCATGTCGCTGATCCCGGGCATCCTCCTGGGCCTGTTCGCCGGGTTCTTCCCGC GCCTGCTCGGGCCGACCATCATGCGCCTGATGGACATCATGCTGGCCCTGCCGTCCCTGCTGCTGGCCGTGGCGATCGTCGCCATCCTCGGCCCAGGCCT GATCAACACCGTGATCGCCATCGCCGTGGTATCGCTGCCGTCCTACGTGCGCCTGACCCGCGCCGCGGTGATGGGCGAGCTGAACCGTGACTACGTGACC GCCGCGCGCCTGGCCGGTGCCGGCCTGCCGCGCCTGATGTTCATCACCGTGCTGCCCAACTGCATGGCGCCGCTGATCGTCCAGGCGACCCTGAGCTTCT CCTCGGCGATCCTCGATGCCGCGGCCCTGGGCTTCCTCGGCCTTGGCGTCCAGCCGCCCACCCCTGAATGGGGCACCATGCTGGCCTCGGCCCGCGACTA CATCGAACGCGCCTGGTGGGTGGTGAGCCTGCCCGGTCTGACCATTTTGCTCAGCGTGCTGGCAATCAACCTGATGGGCGACGGCCTGCGCGATGCGCTG GACCCGAAACTCAAGAACGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGATTCCCATGTCACTGCTAGAAATCAAGAATCTCAACGTGCGCTTCGGCGACGCCCAGGCCGTTCCCGTGGTGGATGGCCTGGACCTGAACGTGGAC AAGGGCGAAGTCCTGGCCATCGTCGGCGAATCCGGCTCCGGCAAGTCCGTGACCATGATGGCGCTGATGGGGCTGATCGAGCATCCCGGCATCGTCACCG CCGACGCCCTCAGCTTCGACGGCAAGGACATGCTCAAGCTCAGCGCCCGGCAACGCCGGCAGATCGTCGGCAAGGACCTGGCCATGGTCTTCCAGGACCC GATGACCGCGCTGAACCCGAGCTACACCGTGGGCTTCCAGATCGAGGAAGTGCTGCGCCTGCACCTGAAGATGTCCGGCAAGGCGGCCCGCAAGCGCGCC ATCGAACTGCTGGAAAAAGTCGAGATCCCGGGCGCCGCCAGCCGCATGGACGCCTACCCGCACCAACTGTCCGGCGGCATGAGCCAGCGCGTGGCGATTG
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| Amino Acid Sequence |
>peptide ABC transporter
MSTPTSSVAVSAVAVDQSLLYPSPYKEFWQAFSRNKGAVAGLLFMLLVIFCAIFAPWVAPHNPSEQYRDFLLTPPVWLEGGQWQFILGTDELGRDLLSRL ITGSRLSLLIGLSSVVMSLIPGILLGLFAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAVVSLPSYVRLTRAAVMGELNRDYVT AARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDAL DPKLKNAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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