Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS13975

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GATGATGCAGTCCGACCTGGCGAAGATCGGCCTCAAGATCGACATCCGCGTCATGGAATGGGGCGAGATGCTCAAGCGCGCCAAGAACGGCGAGCACGAC ATGGTTTCCGCCGGCTGGGCGGGGGATAACGGGGACCCGGACAACTTCCTGACCCCCAACCTCAGTTGCGAGGCCGCCAAAAACGGCGAAAACTACGCTC GCTGGTGCAATAAAGCGTTCCAGAGCCTGATCGATCAGGCCCGCGCCGAGTCCGAGCCGGCCAAACGGACCGCACTCTATGAACAGGCCCAGGACATTTT CGACAAGGAACAACCCTGGATCCCCATGGCCTATCCGAAAATGTTCACCGCAATGCGCAAGAACGTCGAGGGCTACCACCAGAGCCCCCTGACCACCAAC AACTTCGCTACCACCCAGGTGAAGTAGATAAGAAACGCCCGGCATCCCTGACCCCAGGGATGCCGGACACGCCTAACCGGCTGATGAGGTACACCAGAAG
DNA Sequence for Gene
>PCH03S_RS13975
ATGTTTAGTTTTATTGCCCGCCGTGTGGGGTTGTTGATTCCCACATTCTTCGGCATCACCTTGCTGACGTTCGCATTGATTCGCATGATTCCCGGCGATC CCGTGGAAGTCATGATGGGCGAGCGCCGGGTAGACCCTGAGATGCATGCCCAGGCAATGGAACGCCTTGGTCTGAACAAACCGCTGTACGCCCAGTACCT GGACTACATCGGCAAACTCGCCCAGGGCGACCTGGGTGAATCCCTGCGGACTCGCGAGAGTGTGTGGACCGAGTTCACTTCCCTGTTCCCGGCGACCCTG GAACTGGCCTCGGCCGCGATGCTGTTCGCCGCCGTGATCGGCCTGCTGGCCGGGGTGATCGCCGCGCTGAAACGAGGATCGCTGTTCGACCACGGGGTGA TGGGCATCTCCCTCGCCGGCTATTCGATGCCGATCTTCTGGTGGGGCCTGATCCTGATCATGTTCTTCTCCGTGAGCCTGGGCTGGACTCCGGTTTCCGG ACGGCTCGACCTGCTCTACGACATCGAGCCGAAAACCGGCTTCATGCTCATCGACACCCTGCTGGCCGATGACACCAGCGCCTTCTTCGACGCCCTGCAC CACCTGATCCTGCCGGCCATCGTGCTCGGCACCATTCCGCTGGCGGTGATCGCGCGGATGACCCGTTCCTCGATGCTCGAAGTGCTGCGCGAAGACTACA TCCGCACCGCCAAGGCCAAGGGCCTGTCGCCCGCCCGCGTGGTGTTCGTCCACGGTCTGCGCAACGCGCTGATCCCGGTGCTGACCGTGGTCGGCCTGCA AGTCGGCACCCTGCTGGCCGGCGCGGTCCTGACCGAAACCATCTTCTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATCGGCGCCCGGGACTAC CCCGTGGTGCAGAACGGCATCCTGTTGATCGCCTGCCTGGTGATCCTGGTCAACTTCGTGGTGGACATCCTCTACGGCTTTGCCAACCCACGCATTCGCC ACCAGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGACAATACTCATGAGCACTCCAACCTCCTCAGTAGCCGTATCCGCCGTGGCCGTGGATCAAAGCCTGCTGTACCCCTCGCCGTACAAGGAATTCTGGCA GGCGTTCTCGCGCAACAAGGGCGCGGTGGCCGGCCTGCTGTTCATGCTGCTGGTGATCTTCTGCGCGATCTTCGCGCCCTGGGTCGCCCCGCATAACCCG AGCGAGCAATACCGCGACTTCCTGCTGACCCCGCCGGTCTGGCTCGAAGGCGGCCAATGGCAATTCATCCTCGGCACCGACGAACTGGGCCGTGACCTGC TGTCGCGCCTGATCACCGGTTCGCGCCTGTCGCTGCTGATCGGCCTGTCGTCAGTGGTCATGTCGCTGATCCCGGGCATCCTCCTGGGCCTGTTCGCCGG GTTCTTCCCGCGCCTGCTCGGGCCGACCATCATGCGCCTGATGGACATCATGCTGGCCCTGCCGTCCCTGCTGCTGGCCGTGGCGATCGTCGCCATCCTC
Amino Acid Sequence
>peptide ABC transporter permease
MFSFIARRVGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYIGKLAQGDLGESLRTRESVWTEFTSLFPATL ELASAAMLFAAVIGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRLDLLYDIEPKTGFMLIDTLLADDTSAFFDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site