Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS18260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCACCGGCATGGCGCTGTTCCTGACGATGTTCATCATGGCCCCGGTGTTCGACCGGGTGAACCAGGATGCCCTGCAGCCGTACCTGGCGGAGAAACTCAA CGCCCAGGACGCGGTGGCCAAGGCCCAGGTGCCGATCAAGGACTTCATGCTGGCCCAGACCCGCAGCAGCGACCTGGAGCTGTTCATGCGTCTGTCCAAG CGCACCGACATCGCGACACCGGACCAGGCGCCGCTGACGATCCTGGTACCGGCCTTCGTCACCTCGGAGCTGAAGACCGCGTTCCAGATCGGCTTCATGA TCTTCATTCCGTTCCTGATCATCGACCTGGTGGTCGCCAGTGTGCTGATGGCCATGGGCATGATGATGCTGTCGCCGCTGATCATTTCCCTGCCGTTCAA GATCATGCTGTTCGTGCTGGTCGATGGCTGGGCCCTGATCATCGGTACCCTGGCGGGCAGTTTCGGTGGTGTTTAGAACCTTGTTGGCGGGTGACGCGCT
|
|
| DNA Sequence for Gene |
>PCH03S_RS18260
ATGACGCCTGAAGTCGCAGTAGACCTGTTTCGCGAAGCGCTCTGGCTGACCACCATGATGGTCGCCATCCTGGTGATTCCCAGCCTGCTGGTGGGCCTGC TGGTGGCGATGTTCCAGGCCGCTACCCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGCCTGTTGGTGATGCTGGTGACGCTGATCGTCGCCGGTCC CTGGCTGGTGCAAACCTTCATGGAATACATCCTGCAGTTGTACGGCAGTATTCCGCAGTTGATCGGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCATGTCTCTGCTGGCGCTTACCGATACGCAGATCAGCACCTGGGTCGCGAGCTTCATGCTGCCGCTGTTCCGTATCGGCGCCGTGTTGATGACCATGC CGGTCTTCGGTACGACCCTGGTGCCGACCCGTATCCGCCTGTATTTCACCCTGGCCATCACGGTCGTGCTGGTGCCGGGCCTGCCGCCCATGCCGGCGGT CAATGCGCTGGATCTCAGCGGGCTGCTGCTGATCGCCGAGCAGATCATCATCGGCGCCTTGTTCGGCTTTTCCTTGCAGTTGTTCTTCCAGGCTTTCGTG ATCGCCGGGCAGATCATTTCGACGCAGATGGGCATGGGCTTCGCGTCCATGGTCGACCCCACCAACGGCGTTTCGGCGGCAGTGATCGGGCAGTTCCTGA CCATGCTGGTGACCTTGCTGTTCCTCGGCATGAACGGTCATCTGGTGGTCTTCGAGGTGCTGACCGAAAGCTTCACCACCTTGCCGGTGGGCAGCGCGCT
|
|
| Amino Acid Sequence |
>flagellar biosynthesis protein FliQ
MTPEVAVDLFREALWLTTMMVAILVIPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVAGPWLVQTFMEYILQLYGSIPQLIG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|