Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS17620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCAGCACTTCGAGCGCCGCACCATCAAGGAAGTCAAAGGCACCTACAGCGGGCCGAAGAAGGTCAAGGCCTCCGGCAAGGCCGCGGGTGTGAAGAAGA AAAAGACCGACGCCAAGGGCGACAAGAAAAAAACCGTGGCCAAGGCCCCGACCAAACGCAAGACCGCCAACCGGCCGAAAAGCGATGCCTTGGTCAGCCA GGACGGCATGGCGCCGCTCAAGCGCCGCAAGCCAGCACCGGCTGCCGAATAAGCCGTAGCGCCATACAAAAAGCCCGGACCCCGTCCGGGCTTTTTATTG GCCGGCGATCAGCTGTCGGCCTTCTTCTTGGCCGCGCCTTCACTGGCTCTGGCCCCTCGACGACTTGAGTTCTTCGCTGGAACCCTCGTTGCAGAGCCTC TCTCCTGCACCAGCCGGCAGGATGAATGATTGACGCCAAAATGATGGCCAATTAACATATTGATATCATTTTGATACTAATGCGTCTCGAGGGATCGAAC
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| DNA Sequence for Gene |
>PCH03S_RS17620
ATGTACTCACCCGCCCTCGCGGGGAGGTTGTGCCTGGCTTTGCTGTGCTTGACTCCGCTACACCTCGTTCATGCTGCTCCCACCCCCGGTGACACCGACC TGATCCGCGAACGCCAGGACCGCCTGCTCGAAGAGCAGCGCCGGCGCCTGGAGGAACTCAAGGACCTGCCCGGAAAAGAGGCCGCTCCCACAGCGCCGAC CGCGCCTGCCGACACCCGCTGTTTCCCGATCCAGGACATCGAACTCAAGGGCGCCGACAGCCTGTCCGCCGCCGAGCAGGCGCGCCTGCTCAAGCCCTAT ATCGGCCAATGCCTGGGCGTCAGCCAGCTCAACGAGTTGCTCAAGGTCATCACCGACTACTACCTCGAGAAGGGCCTGGTGACCAGCCGTGCCTACCTGC CGCAGCAGGACCTGTCCGGCGGACACCTGAAGGTGCTGGTGGTCGAGGGCCGGCTCGAAGGCTTGAAAGGCGCCGCCGACAGCCAGTTGTCCGAGCGGGA GCTGGCCATGGCCTTTCCCGGCCAGGTCGGCGCGCTGGTCAACCTGCGGGAAATCGAACAACTGGTGGACCAGCTCAACCGCCTGCCGTCGAACCAGGCG CAAATGGAGCTGGCCCCCGGCAAGGAGGTCGGTGGCAGCCAAGTGCTGGTCAAGAACACCGCGCAAAAGCCCTGGCGGGCCGGGCTGTCGCGCAGCAACG ACGGCCAGCGCAGCACCGGCGAGCAGCAGTGGGGCACCACCTTCGACTGGGACAGCCCGCTGGGGCTGGCCGACCAGTTGATGTTGCGCGGTGGCCACGA TGCCATGAGCGACCACCAGCACACCTCCAACAACGCCATGCTCTCTTACAACCTGCCCTGGGGCTGGTGGAACTTCAGTTACACCTACAGCCAGAGCGAG TACCGCTCCCAGGCCCAGGCCAATGGTTTCAGCTTCAAGCAGACCGGCGACAGCCAGAACCACCAGCTGCGCGCCGAGCGGGTGATCCTGCGTGATGCAG TGAGCAAGACCTCGCTGAATGCCGGGCTGGCCTACCTGCGCACCAACAACTTCATCGAAGACAGCAAGCTGGCCCTGAGCAGCAATCGCCTCAGCGAAGC CCAGTTCGGCATCAACCACGGCCGGCGCATCGGCGGTGCCTTCGTCAACCTCGACCTGGGCATGCAAAACGGCATCGGTGCCTTCGACGCCCAGGACAAT GGCCACCCAGGGCCGGGCGAGCCGAATGCGCGCTACCGCAAATACACCGCCACCCTCAGTTACCTGCAGCCGTTCAAGCTGTGGGGCGAGTCGTTCAGCT TCAGCAGCCTGATGACCGGCCAGCGCAGCGAAGACGTGCTGTTCAGCCCGCAGCGCACCAGCCTCGGCGGGCAGTCGTCGATTCGCGGGTACAAGGATCA GTCACTGTCCGGCGACAGCGGCGGTTACTGGCGCAACGACCTGCGCTGGAGCCGTCCGGTGACCCTCGGCTGGCTGCGTCCGGTGTTCGCCGAGTACGGC AGCAGCCTGGGCTACGACCAAGGCGTGATCCGTGGCGACCGTTACAACGGTGAGCAGCACGGGCGTCTGTCGAGCAACTCCCTGGAGCTGTTCGCCCGCG GCCAGCACCTGGCGACCAGCGTGACCTTCGCCCATTCCCTTGAGCGTCCGGATGTCCTGACTGAGCGCGAAGCGCCGATCTACTTCCGCCTGGACTTTTT CCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCGCGTTTTTTCGAGACTTCGACATGGACGTTCGCCAATTCGCCTTCCTGGCCCGTCAGCCTTCTGCTGCCCTGCAAACCCGCGAGCACTTCTGCGGCC TGCCCAAGCGCGGCCTGGCGTTCATCCTGGCCAACGCCATGTTCTGGCAACCGCTGTGGGCCCAGGCGGAAGGCATCGTGGTCAGCGCGCCGGGCACCAG CCTGGGGCAGGCGGGCAACGGCGTGCCCATCGTCAATATCGCCACGCCCAATGGCAGCGGCCTGTCGCATAACCAGTTCCACGACTACAACGTCGGCCAG CAGGGTCTGATCCTCAACAACGCCACCGACCGCACGCAGAGCACCCAACTGGGCGGGATCATCGTCGGCAACCCGAACCTCAAGGGCGTCGCCGCGCAAA CCATCCTCAACGAAGTCAACGGTGGCAGCCCCAGCCAACTGCGCGGCTACACCGAAGTGGCGGGGCAGTCGGCCCATGTGATCGTCGCCAACCCCTATGG
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MYSPALAGRLCLALLCLTPLHLVHAAPTPGDTDLIRERQDRLLEEQRRRLEELKDLPGKEAAPTAPTAPADTRCFPIQDIELKGADSLSAAEQARLLKPY IGQCLGVSQLNELLKVITDYYLEKGLVTSRAYLPQQDLSGGHLKVLVVEGRLEGLKGAADSQLSERELAMAFPGQVGALVNLREIEQLVDQLNRLPSNQA QMELAPGKEVGGSQVLVKNTAQKPWRAGLSRSNDGQRSTGEQQWGTTFDWDSPLGLADQLMLRGGHDAMSDHQHTSNNAMLSYNLPWGWWNFSYTYSQSE YRSQAQANGFSFKQTGDSQNHQLRAERVILRDAVSKTSLNAGLAYLRTNNFIEDSKLALSSNRLSEAQFGINHGRRIGGAFVNLDLGMQNGIGAFDAQDN GHPGPGEPNARYRKYTATLSYLQPFKLWGESFSFSSLMTGQRSEDVLFSPQRTSLGGQSSIRGYKDQSLSGDSGGYWRNDLRWSRPVTLGWLRPVFAEYG SSLGYDQGVIRGDRYNGEQHGRLSSNSLELFARGQHLATSVTFAHSLERPDVLTEREAPIYFRLDFFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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