Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS19875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCGATGATTCGCCAGGGCCGCCCGGCGCCGGTGCCGGCAGCTGTCGAGGAGGCGGGCGAATACCCGCTGGACGATGCCGAACGCCTGGCCTTGCTCA ACGTCCTGGAACAACAGCGTTGGCACATGACCCACACCGCCGAGCAGTTGGGGGTGAGCCGCAACACCCTCTATAGAAAGCTACGCAAGCATGGGATCGC TCGCTAGGCGCGGTACCGCGTTATCGTTCATCGCGGGCAAGCCTCGCTCCTACAGAGCAATAGGCATCTTCTGTAGGAGCAGCCGGTCGACGCTCGATTG CTCGCGACAGGCGGCGCAGCCGCCGATACATCGGTAACCGCGGTCTAAGCCTCCAGCCGCGTTCGGGTGATTCCCCGGCAAAAGCCCCACAGAACTCGTC ATAGCCTCCGGCAGTGACAACCGTGTGTTCCCCCATCAGCTAAAGAGTGCGATTTGCAGCCCTCTACGCTAACCTGCCTCGATGTTTTACGAGGTCGACT
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| DNA Sequence for Gene |
>PCH03S_RS19875
ATGCACATTCATATTCTCGGTATTTGCGGCACTTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCATGTCACCGGCTCCGATGCCAACG TCTACCCGCCGATGAGCACCCAGCTCGAAGCCCAGGGCATCGAGTTGACCCAGGGCTACGACCCGGCCCAGCTTGACCCGGCGCCGGACCTGGTGGTGAT CGGCAACGCCATGTCCCGCGGCAACCCGGCGGTGGAGTATGTGCTGAACAAGGGCCTGCCCTATGTTTCCGGCCCGCAATGGCTGGCCGACCATGTGCTG CAAGGCCGCTGGGTCCTGGCGGTCGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCATGCGGGCATGAGCCCTGGCT TCCTGATCGGCGGCGTGCCGCAGAACTTCTCGGTGTCGGCCCGCCTGGGTGGCACACCGTTCTTCGTGATCGAGGCCGATGAATACGACAGTGCCTTCTT CGACAAGCGCTCGAAGTTCGTGCACTACCGTCCGCGCACGGCGATCCTGAACAACCTCGAGTTCGATCACGCAGACATCTTCCCCGATCTGCCGGCTATC GAACGGCAGTTCCACCACCTGGTGCGGACCATCCCGAGCGAAGGTCTGGTCATCCACCCGACCACCGAACCGGCCTTGTTGCGGGTGATCGACATGGGCT GCTGGACCCCGGTGCAAACCACCGGCGCGGGCGGCCAATGGCAGGTCAAGCTGCTCAGCGAAGACGGCTCGAAGTTCGAAGTGATGTTCGAGGGCGAGGC CCAAGGCGTGGTCGAGTGGGACCTGACCGGCCAGCACAACGTTGCCAACGCCCTGGCCACCCTGGCCGCGGCGCGCCATGTCGGTGTGGTGCCGGCCATG GGCATCGCTGCGCTGAGCGCATTCAAGAGCGTCAAGCGGCGGATGGAGAAGGTCGCTGAAGTCCATGGCATCACCATCTATGACGACTTCGCTCACCACC CGACCGCCATCGCCACTACTCTGGACGGCCTGCGCAAGCGCATCGGCGATGCGCCGTTGATTGCGATCATCGAGCCGCGCTCCAACTCCATGAAGCTCGG CGCTCACCGTGACGGGCTGCCGGAAAGCGTCAACCAGGCCGATCAAGTGGTCTGGTATTCGCCGGCCAACCTTGGCTGGGACCTGGGTGCCACCGCCGCG CTGTGCACCGTGCCATCGATTGTCAGCGATTCCCTGGAAGGCATCATCGAGCGGGTGAAGAGCCAGGCCAAGCCGGGCACTCACGTGGTGATCATGAGCA ATGGCGGCTTCGGTGGCCTGCACGGCAAACTGGCCGAGGCACTGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAACGGCCCGGAACGCATCACCCTGGCGATGACCGGCGCCTCGGGCGCCCAGTATGGCCTGCGCCTGCTGGATTGCCTGGTGCGCGAAGACCGTGAAGT GCACTTCCTGATCTCCAAGGCCGCGCAGTTGGTGATGGCGACCGAGACCGACGTGACCCTGCCGTCCAAGCCGCAGACCATGCAGGCCTTCCTCACCGAG TACACCGGTGCCGCTGCCGGGCAGATCCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGCTCGCCGGCGGCGATGGTGGTGG TGCCTTGCTCCACCGGCACCTTGTCGGCCATCGCCACAGGCGCCTGCAACAACCTGATCGAGCGCGCGGCGGACGTCACCCTGAAGGAGCGCCGCCAGTT GATCCTGGTGCCGCGCGAAGCGCCTTACTCGAGTATCCATCTGGAGAACATGCTCAAGCTGTCGAACATGGGCGTGACCATTCTGCCGGCCTCTCCGGGT
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGGTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALLRVIDMGCWTPVQTTGAGGQWQVKLLSEDGSKFEVMFEGEAQGVVEWDLTGQHNVANALATLAAARHVGVVPAM GIAALSAFKSVKRRMEKVAEVHGITIYDDFAHHPTAIATTLDGLRKRIGDAPLIAIIEPRSNSMKLGAHRDGLPESVNQADQVVWYSPANLGWDLGATAA LCTVPSIVSDSLEGIIERVKSQAKPGTHVVIMSNGGFGGLHGKLAEALR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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