Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS19800
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGCAATAAGGGACGGCTGTGCGCCTGCGTCTGATCGCTGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAGGGTTGGCACGAGTATGCCAAGCGTCT GCCATCCGAACTGGCGCTGGAACTGGTGGAAATACCGCTCAATACCCGTGGCAAGAACGCCGATGTGGCCCGTTTCATCCGTCAGGAAGGCGAAGCCATG CTGGCCAAGGTCGGCCAGAACGAGCGGATCGTCACCCTCGAGGTCCACGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTGGAACTGGATCGCTGGCGCC TCGACTCGCGCACCGTGAACTTCATGGTCGGCGGCCCCGAGGGGCTGGCGCCGGAAGTCTGCGCGCGGGCGGACCAGCGCTGGTCGCTGTCGCCTTTGAC CTTGCCGCACCCGCTGGTACGGATCCTGATCGGTGAACAGCTGTATCGCGCCTGGACGGTCCTGTCCGGGCACCCTTATCACAAATAGCCCGCGCCCCTA
|
|
| DNA Sequence for Gene |
>PCH03S_RS19800
ATGTCCCAGCCGATCCGTATCAAGGACCACGAAAAAGACGCCCGTCTGGTGCGTGGCCGGGTCGTGTTCGGGGCTATTGCCGTGGTCTGCCTGATCGGGG TGCTGATCGCGCGCCTGTATTACCTGCAGGTGATCCAGTACGACTATCACTCGACCCTGTCGGAAAACAACCGGGTTCACGTCCAGCCGATTCCGCCGAC CCGCGGCCTGATCTTCGACCGTAATGGCGTAGTAGTGGCCGATAACCGGCCGAGCTTCAGCCTGAGCATGACCCGCGAGCGTTCCGGCGACTGGCGCCAG GTGCTCGACGTCATTGTCGAAGTGCTGGAGCTGACGCCGGAAGACCGGGTGCTGTTCGAGAAACGCATGAAGCAGGGACGCCGGCCGTTCGAGCCGGTGC CGATCCTGTTCGAGCTCAACGAAGAGCAGATCGCCCGGATCGCGGTCAACCAGTTCCGCCTGCCCGGGGTGGAAGTGGTGGCGCAGCTGGTCCGCCATTA CCCCCAGGGCGCGCACTTCGCGCACTCGGTGGGCTACATGGGGCGGATCAACGAGAAAGAGCTGAAGACCCTGGACCCGGTGAACTACAGCGGCACCCAC CACATCGGCAAGACCGGCATCGAGCGCTTCTACGAGCCCGAGCTGCACGGCCAGGTGGGGTATGAAGAGGTCGAGACCAACGCTCGCGGTCGTGTGTTGC GGGTGCTCAAGCGGACCGACCCGATTCCCGGCAAGGACATTGTCCTGAGCCTGGACATCAAGCTGCAGGAAGCCGCGGAGGCTGCCTTGGGCGGGCGGCG TGGCGCGGTGGTAGCGCTGGACCCGAACACCGGGGAAGTGCTGGCCATGGTCAGCCAGCCGAGCTTCGACCCGAACCTGTTCGTGACCGGCATCAGCTTC AAGGCCTATGCCGAGCTGCGCGACTCCATCGACCGTCCGCTGTTCAACCGGGTGCTGCGCGGCCTGTACCCGCCGGGCTCGACCATCAAGCCGGCGGTGG CGATCGCCGGCCTCGATTCCGGAGTGGTGACGGCCTCCACGCGGGTCTATGACCCGGGCTACTACCAACTGCCCAACTACGACCACAAGTACCGTAACTG GAACCGCAGCGGTGACGGTTACGTCGACCTCGACACCGCGATCATGCGGTCCAACGACACCTACTTCTATGACCTGGCCCACAAGCTGGGGATCGATCGG TTGTCGGCCTACATGAACAAGTTCGGGATCGGCCAGAAGGTCTCGCTGGACATGTTCGAGGAATCGCCGGGCCTGATGCCGTCGCGGGAATGGAAGCGCG CCACCCGCCGCCAGGCCTGGTTCCCGGGTGAGACGCTGATTCTCGGGATCGGCCAGGGTTACATGCAGTCCACCCCGTTGCAGTTGGCCCAGGCCACGGC GCTGGTGGCGAACAAGGGCAAATGGAACCGTCCGCACCTGGCCAAGACCATCGAGGGCGAAAAGCCGGTGGATGAAAACCCGATGCCGGACATTGTCCTG CGCGATCCGTCGGACTGGACGAAGGTCAACCACGGCATGCAGCAGGTGATGCACGGTGCCCGTGGTACGGCGCGCAAGGCGGCCATCGGCTCGCAATACC GGATCGCCGGCAAGAGTGGTACGGCCCAGGTGGTCGCGATCAAGCAGGGCGAGAAGTACGACCGCTCCAAGGTCCAGGAGCGCCATCGCGACCACGCCCT GTTCGTCGGCTTCGCGCCGGCGGAAAACCCGAAAATCGTGGTCTCGGTCATGGTCGAGAACGGCGAGTCCGGCTCCGGCGTGGCGGCCCCGGTGGTGCGC CAGGTGATGGACGCCTGGCTCCTCGGCCCGGATGGCCTGCTCAAGCCTGAGTTTGCCGGCCCTATCAGTGCGGAGGCTACGGCCCGTGAAGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTCGATCGCATCCTGTCCAGCGAGGATGTGATGCGTCGCCGTGCGACGCTGTTGCAGCGCATGCACATTGACGGCCCATTGCTGATCCTGCTGCTGACC CTGGCGGCCGGCAGCCTGTTCGTCCTGTATTCGGCGAGCGGCAAGAGCTGGGACTTGCTGGGCAAGCAGGCGACGTCATTCGGCATCGGCCTGGTGTCGA TGATCATCATCGCCCAGCTCGAGCCCCGGTTCATGGCGCGCTGGGTGCCACTGGCCTATGTGTTCGGCGTGGTGCTGCTGGTGGTGGTGGATGTCATGGG ACACAACGCCATGGGCGCCACCCGCTGGATCAATATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGGCCAAGCGCAGCTTGCCGCCGCAGCTCAAGCATGTGGGCATCAGCCTGATCCTGATCGGAATCCCGTTCATTCTGATCGTGCGCCAGCCGG
|
|
| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRIKDHEKDARLVRGRVVFGAIAVVCLIGVLIARLYYLQVIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWRQ VLDVIVEVLELTPEDRVLFEKRMKQGRRPFEPVPILFELNEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPNTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASTRVYDPGYYQLPNYDHKYRNWNRSGDGYVDLDTAIMRSNDTYFYDLAHKLGIDR LSAYMNKFGIGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQSTPLQLAQATALVANKGKWNRPHLAKTIEGEKPVDENPMPDIVL RDPSDWTKVNHGMQQVMHGARGTARKAAIGSQYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPAENPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLGPDGLLKPEFAGPISAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|