Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS22360 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCTTTGAGCGGACCTTGAGCGAGCTGGTAGAGCTCGAGGGCTTAACGCTTAGCTATTACCGTGGTTGGGATAAAGAGCGAGAGCTCAGTGCAGTGCTC GCGACATCCCTCCATCGTGATCAGCAAATGGGTCATACCCAGGCCGGCCCCCAACGTGCTGATTTGCGTCTCAGATTGGGCGCACACAACGCTGCGGACA TCTTGTCCCGCGGTCAGCAGAAGTTGGTGGTCTGTGCCTTGCGGATCGCCCAGGGGCACCTGGTCAGCCAGGCCCGGCGCGGTCAGTGTATTTATCTGGT GGATGACTTGCCGTCCGAGCTGGACGAGCAGCATCGCCGCGCACTTTGTCGCTTGTTGGAAGACTTACGCTGCCAGGTGTTCATCACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCCCTGTTCCACGTGGAACAGGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>PCH03S_RS22360
|gyrB
ATGAGCGAAGAAAACACGTACGACTCGAGCAGCATTAAAGTGCTGAAAGGTTTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGTGACACCGACG ATGGCAGCGGTCTGCACCATATGGTGTTCGAGGTGGTCGATAACTCGATCGACGAAGCTCTGGCCGGCCATTGCGACGACATCAGCATCATCATCCACCC GGACGAATCCATTACCGTGCGTGACAACGGTCGCGGCATCCCGGTAGACGTGCATAAAGAAGAAGGCGTTTCCGCGGCCGAGGTCATCATGACCGTACTG CACGCCGGCGGTAAGTTCGACGATAACTCCTACAAAGTATCCGGCGGTCTGCACGGTGTGGGTGTGTCGGTAGTGAACGCCCTGTCCGAAGAACTGGTCC TGACCGTTCGCCGCAGCGGAAAGATCTGGGAACAGACCTACGTTCACGGTGTGCCTCAGGCGCCTATGGCGATCGTCGGTGACAGCGAAACCACCGGTAC CCAGATTCACTTCAAGGCGTCCAGCGAGACCTTCAAGAACATCCATTTCAGCTGGGACATCCTGGCCAAGCGGATTCGTGAACTGTCCTTCCTCAACTCC GGTGTCGGTATCGTTCTGAAGGACGAACGCAGTGGCAAGGAAGAGCTGTTCAAGTACGAAGGCGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACCGCGGTCAACCAGGTGTTCCACTTCAATGTGCAGCGTGAAGATGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAAAACCT GCAGTGCTTCACCAACAACATTCCGCAGCGCGATGGCGGCACCCACTTGGTGGGCTTCCGTTCGGCACTGACGCGTAACCTGAACAACTACATCGAACAG GAAGGTCTGGCGAAGAAGCACAAGGTCGCCACCACCGGTGACGATGCCCGCGAAGGCCTGACCGCGATCATTTCGGTCAAGGTGCCGGATCCGAAGTTCA GCTCCCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACCGCGGTTGAACAGGAAATGGGCAAGTACTTCTCCGACTTCCTGCTGGAAAACCCGAA CGAAGCCAAGCTGGTGGTCGGCAAGATGCTCGACGCCGCCCGTGCCCGTGAAGCGGCGCGTAAGGCTCGTGAGATGACCCGCCGTAAAGGCGCGCTGGAT ATCGCCGGCCTGCCGGGCAAACTGGCGGACTGCCAGGAAAAAGACCCTGCCCTTTCCGAACTCTACCTGGTGGAAGGTGACTCTGCTGGCGGCTCCGCCA AGCAGGGACGCAACCGTAAGACCCAGGCGATTCTGCCGCTCAAGGGCAAGATCCTTAACGTCGAGAAAGCGCGCTTCGACAAGATGATTTCCTCGCAAGA GGTCGGCACCTTGATCACTGCACTCGGTTGCGGCATCGGCCGCGAAGAGTACAACATCGACAAGCTGCGTTATCACAACATCATCATCATGACCGACGCT GACGTCGACGGTTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGATCGAGCGTGGCTACATCTACATCGCTCAACCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAAGAGCAATACATCAAAGACGACGACGCCATGGAAGAGTACATGACGCAGTCGGCCCTGGAAGATGCGAGCCT GCACCTGAACGAAGAAGCACCGGGTATTTCCGGCGAGGCGCTGGAGCGCCTGGTGAACGACTTCCGCATGGTCATGAAAACCCTCAAGCGTCTGTCGCGC CTGTACCCTCAGGAGCTGACCGAGCACTTCATCTACCTGCCGGCCGTGAGCCTGGAGCAACTCTCCGATCACGCGGCCATGCAGGATTGGCTGGCCCAAT ATGAAGTCCGCCTGCGCACCGTCGAGAAGTCCGGCCTGGTCTACAAGGCCAGCCTGCGTGAAGACCGTGAACGTAATGTCTGGCTGCCAGAGGTCGAACT GATCTCCCACGGCCTGTCGAACTACGTCACCTTCAACCGCGACTTCTTCGGTAGCAATGACTACAAGACCGTCGTTACCCTCGGCGCTCAACTGAGCTCC CTGCTGGACGAAGGCGCTTATATTCAGCGTGGCGAACGCAAGAAGGCGGTGACCGAGTTCAAGGAAGCCCTGGACTGGCTGATGACCGAAAGCACCAAGC GCCACACCATCCAGCGATACAAAGGTCTGGGCGAGATGAACCCGGATCAGCTGTGGGAAACCACCATGGACCCAAGCGTGCGCCGTATGCTCAAGGTCAC GATTGAAGATGCCATCGGCGCCGACCAGATCTTCAACACCCTGATGGGGGATGCGGTCGAGCCTCGTCGCGACTTCATCGAAAGCAACGCCCTGGCGGTA TCCAATCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGCTGAACTTCTGGGGTAGGTACTGAGTCGAAATAGGTGTTTTGTGATTTGCGCTTGAAAAATGGAGGTCAACAGGGCTCTGTTGACCTCTTTTTTGA TTGAAATCATATAGATAAGCTTGGTTTAAAATTATAGGCCTCGGAGAGTTTGAACGAGCGTACGTCGGTCTACTTTTGATAGCCCTTTAAAATAAGTTTT TAAGTTATGTATTATTCAGTGCCCTAACAGAAACTACTGGCGATCACGTTGAGCCAGAATATGCAAAGGAAGTGTCTAGATTGAATCCTCATGCTGCCCG CTCTATCTCACCTTCAACCTTGATTCGCTCCATAAGGAGCAATCGAAGCCTAATTTTTAATTTGATCCGTCGTGAGGTTTCCGGGCGCTATCGTGGATCT GCGATGGGGCTATTGTGGTCATTTTTCAATCCGGTACTTATGCTGGCTGTTTATACATTTGTATTCAGTGTTGTATTCAAAGCAAGATGGGTTGGGGGAA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSETTGTQIHFKASSETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNVQREDGIGVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEEAPGISGEALERLVNDFRMVMKTLKRLSR LYPQELTEHFIYLPAVSLEQLSDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSS LLDEGAYIQRGERKKAVTEFKEALDWLMTESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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