Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS26300

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTGCTGACCCGCCTCAAGGCGCTGGGGCTGAAAGTGGCGCTGGACACCAGCGGCGAAGCCCTGCGTGCTGGCCTGGCCGCCGGGCCCTGGCTGGTCAAGC CCAATACCGAGGAGCTGGCCGAGGCCCTGGACAGCCCGGTGCTGTCGCTGGCGACCCAGGCCGAAGCCGCCAGGCGCCTGCACGCCCAGGGCGTCGAGCA TGTGGTGATTTCCCATGGCGCCGAAGGCGTGAACTGGTTCAGTGCCGCGCCGGCCCTGCAGGCGCTGCCGCCCAAGGTCAGCGTGGCCAGCACCGTCGGT GCCGGCGACTCGTTGCTGGCCGGCATGCTCCACGGCCTGCTCAGCGCCCACGCGTTTGAACAGACCCTGCGCACCGCCACGGCCATCGCCGCCATGGCCG TGACCCAGATCGGTTTCGGCATCACCGATGCCGCGCAGTTGGCACAGCTTGAACAGGGGGTGCGCGTTCATCCCCTCATAGAACAATAAGAGGGTTGGTC
DNA Sequence for Gene
>PCH03S_RS26300
ATGAAGTTAGCCATTGTTACCGCCTGCCCGAACGGCATGGTCACCAGTGTGCTGTGCGCCCGGTTGCTGGACGCCGCGGCCCAGCGCCAGGGCTGGAGCA CCAGCGTCGAAGTGCATGACGAGGCGCACCCGGAACGGCAGTTGTCGTCCGCCACCCTCGAAGCGGCCGAATGGGTGCTGGTGGTCAGCACCGGGCCCTT GGACATGTCGCGGTTTGTCGGCAAGCGGGTGTTCCAGAGCTCGCCCTCAGTGGCCCTGCAGGACGTCGACGGCGTGCTGCGGCGCGGCGCCGAGGAGGCC CAGGTGTATGTCGCGGCCGCAGCCGTGGCCGAGCCGGCACCGGCCAGCAAAAGCGCGCCCCGGCTGGTGGCTGTCACCGCCTGCCCGACCGGCGTGGCCC ATACCTTCATGGCGGCCGAGGCCTTGCAACAGACTGCCAAGCGCCTGGGTTATGAGCTGCAAGTGGAAACCCAGGGTTCGGTCGGCGCACGCAACCCGTT GAGCGCCGAGGCCATTGCCGCGGCGGACGTGGTGCTGCTGGCGGCGGATATCGAAGTACCCACCGAGCGCTTCGCCGGCAAGAAGATTTACCGTTGCGGC ACCGGCATCGCCCTCAAGCAATCCGAGGCCACCCTGAACAAGGCCCTGGCCGAAGGCCAGGTGGAATCGGCAGCGGCGGGCGCTGCCGCAGCCCCGGCCA AGCAGGAGAAAACCGGGGTCTACAAGCACCTGCTGACGGGGGTGTCGTTCATGCTGCCGATGGTGGTGGCGGGTGGTTTGATGATCGCCCTGTCCTTCGT CTTCGGTATCACCGCGTTCAAGGAAGAGGGCACCCTGGCCGCCGCCCTGATGCAGATCGGCGGCGACACCGCGTTCAAGCTGATGGTGCCGCTGCTGGCC GGTTACATCGCCTATTCCATCGCCGACCGGCCGGGCCTGGCGCCGGGGATGATTGGCGGCATGCTTGCCAGCACGTTGGGGGCAGGGTTTATCGGCGGGA TCATTGCCGGTTTTATCGCCGGTTATACGGCCAAAGCCATCAGCAAATACGCGCGCTTGCCCCAGAGCCTGGAGGCCTTGAAGCCGATCCTGATCATCCC GTTGTTGGCTAGCCTGTTCACCGGCCTGGTGATGATCTATGTGGTGGGCAAACCGGTGGCCGGGATGCTTGCTGGCCTGACCCATTTCCTCGACAGCATG GGCACCACCAACGCGATCCTGCTGGGGGTGTTGCTCGGCGGCATGATGTGCGTCGACCTCGGCGGGCCGATCAACAAGGCGGCCTATGCCTTCTCCGTGG GGTTGCTGGCGTCGCAGAGTTATGCACCGATGGCGGCGACCATGGCCGCCGGCATGGTGCCGCCGATCGGCCTGGGCATCGCGACCTTTATCGCCCGGCG CAAATTTGCCCAGAGCGAGCGGGAAGCGGGCAAGGCGGCGCTGGTGCTGGGGCTGTGCTTTATCTCCGAAGGCGCGATTCCATTCGCCGCCAAGGACCCG TTGCGAGTGATCCCGGCAAGCATCGCCGGCGGCGCGCTGACCGGGGCGCTGTCGATGTATTTCGGCTGCAAACTGATGGCGCCCCATGGTGGGTTGTTTG TGATGCTGATTCCGAATGCGATCAACCACGCATTGCTGTATTTGCTGGCGATTGTGGCGGGGAGTTTGTTGACGGCGGTGGTGTATGCGGTGGTGAAGCG GCCGGAGGCGACCGAGCTGGCGCTGGAGCCGGTCAAGGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTTTGTGTTTGCGGTTTACCTCGATGGCGCCCTCAGTGGCGCCATCGTTGTTTCTGTCGATCGCTGACCCTGTAGGAGCGAGGCTTGCCCGCGATAGCG TCCGTACTGGCGCTGCATTTTTGGGACGGGGTACATATCCATTCCTGCGGTCACGGCCGCTTATGGTTCCGCCCTTACGGCGGGTCACTTTTTTTCAAAC GCCAAAAAAAGTAACCAAAAAACGCTTGCCCCTGCGTACGGCCTTCGCTGCGCTCAGGTTCCCTCGCTCCGGCGTCCATCAGGGGGCATCGACTCCGGTC GGCTTCGCTTCGACCTCCATTCGATGTCCTCGACTGCGTCGAGGGGCGCTGCGCGCCATCCCCCTGATGAACACCTCCACTCGGCCTCCCGATGGGGCGG GTAGATCAAGATCAAAAGCCAAAGCTGGGTGCGACCTGCCGGTCGGCGCGAAACCCTGTAGCCGCTGCCGAGCTTGCGAGGCTGCGATCGACCCCGAAGG
Amino Acid Sequence
>PTS fructose transporter subunit IIBC
MKLAIVTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVHDEAHPERQLSSATLEAAEWVLVVSTGPLDMSRFVGKRVFQSSPSVALQDVDGVLRRGAEEA QVYVAAAAVAEPAPASKSAPRLVAVTACPTGVAHTFMAAEALQQTAKRLGYELQVETQGSVGARNPLSAEAIAAADVVLLAADIEVPTERFAGKKIYRCG TGIALKQSEATLNKALAEGQVESAAAGAAAAPAKQEKTGVYKHLLTGVSFMLPMVVAGGLMIALSFVFGITAFKEEGTLAAALMQIGGDTAFKLMVPLLA GYIAYSIADRPGLAPGMIGGMLASTLGAGFIGGIIAGFIAGYTAKAISKYARLPQSLEALKPILIIPLLASLFTGLVMIYVVGKPVAGMLAGLTHFLDSM GTTNAILLGVLLGGMMCVDLGGPINKAAYAFSVGLLASQSYAPMAATMAAGMVPPIGLGIATFIARRKFAQSEREAGKAALVLGLCFISEGAIPFAAKDP LRVIPASIAGGALTGALSMYFGCKLMAPHGGLFVMLIPNAINHALLYLLAIVAGSLLTAVVYAVVKRPEATELALEPVKA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site