Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS26435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAAGCCAGTCCGTGTCTGAATTGCGGTGCCTGCTGTTCACACTTTCGTGTGTCTTTTTTCTGGGGTGAATGCGCCTCTTCCGGCGGTACGGTCCCCGA CGATCTGGTGGCGTCCATCAGCCCCAGCCGGGTCGCCATGCTCGGCACCGATTGCAAGCCGACCCGCTGCACCGCGCTGACCGGCGAGGTCGGCAAGGAA GTCAGCTGTTCGATCTACCACCAGCGCTCCAGCACCTGCCGCGAATTCGAGGCGTCCTGGGAAAATGGCCAACAGAACGTCGATTGCGACGCCGCGCGCG CGGCATTCGGGCTCGCGCCCCTGGAGCCGGCGCTGTACTTCGAACAGAGTGCTTAGCTCGATTGGCTATGAGCTGAATTCCAAAATCATTTAAGTCAATT TGCCACCATCGTTCCCGGCCTCGACTCGGCTTCCTATACTCAGTCCCATTGGCCAGCCACCCAGGGCTGGCCCTGGATGACTCAAGAAACGGGGCATGCG
|
|
| DNA Sequence for Gene |
>PCH03S_RS26435
ATGGAATGGCTTGGTCTGCATTTTTTTACCGAGCTCCCCGAAGGCGGGCAGGTATTACTCACCTGCAACCACAACCCCGTGCTGGTGATCCTCGCCTATC TGGTGGCCTGCGCCGGCAGCTTCGCCACCCTGGACATGGCCGAACGGGTGCGCCACGTCGACCTGGCGGCGGCCCAGCAACGCTGGCGCTGGGTCGGCGC CTTCTGCCTGGCCGGCGGCATCTGGGCCATGCACTTCATCGGCATGCTGGCACTGCAGATCCCCATCGAAACCCATTACGACCTGCCCATGACCTTGCTG TCGCTGCTGATCGCGGTGATTGCATCCTGGCTGGCGATGAAGACCCTCAGCCATCCCAAGTTGCAGCTATGGCGCTACCTGCTGGCGTCGATCTGGATCG GCCTGGGCATCTGCGCCATGCACTATGTCGGCATGGCGGCCATGCGCTCGCCAGCCACGGCCTACTACCAGCCCGACCTGTTCGGCCTGTCGATTGCCAT CGCCATCAGCGCGAGCCTGGTCGCCCTGCTCTTGTCCCGCTACCTGAGCAACGGCAGCGGCGTGCTCCACCAGTTGCTCAAATACGCGGCCAGCCTGCTG CTGGGGGGCGGCATAGTCGCTATGCATTTCACCGGCATGTGGGCGTTGAAACTGGTGCTGCCGGCGACGGGCACACCCTCCATCGCGGTGGACGACAACC CCTTGCAACTGGGCCTGACCATCGCCGTCATCGCCCTGTTGATCATTGGCAGCAGCATCAGCGCGGCCTTGGCGGACAAGAAACTCCAGCACAAGGAACA GGACCTGCGCCGGGTCAACACCCTGCTGAGCCAACTGGACCAGGCCCGGGTGGCGCTGCAACAGGTGGCGCACTACGACTCCCTGACCAACCTGATCAAT CGTCGCGGCTTCAACCAGCTGTTCGCCGAAAAGCTCATTGAAAAGACCGTGCAGGGCGGCATGCTCGCGGTGATGTTCCTCGACATCGATCACTTCAAGC GGATCAACGACAGCCTCGGCCACGATGCCGGCGACGAACTGTTGAAGGTGATTGCCGGCCATATCAAAAGCTCCACCCGCAGCCATCAAGACGTAGTGGC GCGTTTCGGCGGAGACGAGTTCTGCATCCTCATGAGCTTGAGCGACCGCGACGAAGCCCAGCACATGGCGCAACGCATCATGAGCAGGATGAAGGAACCC ATCGAGCTGGCAGGAAGGCGCATGGTGATGACCACCAGCATCGGCATCAGCGTCTTTCCCGACGACGGCAAGACCAGCGAAGAGCTGCTCAAGCATGCCG ACCTGGCGCTCTATCAATCCAAGGGCAGCGGTCGCAACAGCCTGCATTTCTTCAGCACCAACCTGAAGACCAAGGCGAGCCTGGAACTGCAACTGGAGGA AGAACTGCGCAATGCCCTGCGCAACGAAGCCGGCTTGACCCTGTATTACCAGCCCATCTACGACCTGGGCAGCCGCAAGGTCAGCAAGCTTGAAGCGCTG GTGCGCTGGCGGCATCCGTTGCACGGGCTGCTGGCCCCGGATCGCTTCATCGGGATCGCCGAAGCCAACGGGCTGATTGCCGAACTGGACAACTGGGTCC TGCGCAAGGCCTGCGAGGACCTCGCCGCCCTGTCCCGCCACGGCTTTGCCGAGCTGAAAATCGCGGTGAACTGCTCGGCCCTGAACCTGGCCCGGGAGGA GTTGGCCGAAGAGATCGCCAACGCCCTGGGCAGCGCCGGTGTCGCGCCCCAGCGCCTGGAACTGGAAGTCACGGAAAACGCCCTGATGGGCAACATCGAC AGCACCGTGGCCCTGTTGCGGCAGATCCGCAATCTCGGGGTGTCGCTGTCGATCGATGACTTCGGCACCGGTTACTCGTCCCTCGCCTACCTCAAGCGCC TGCCGCTCAACACCCTGAAGATCGACCGTTCGTTCATCCAGGACGTGCCCCAGTCGACCCAGGACAAAGAGATCGTCCAGGCGATCATCGTCATGGCCCA TACCCTGCACTTGCAGGTGGTGACCGAAGGCGTCGAGAGCGTGCAGCAGTACGAGTTCCTCGCCCAATACGGCTGCGACTTCATCCAGGGTTACCTGCTC AGCCGCGCAATACCCCTGGAAGAGTTGCCCGGGGTGATCGACGAGATCGAGCAGCGCATGCGGCCTGCCGTCGCCGCGGTCAGCCCTCTGGCGCCGGTTC GCGATACAGGCGGACCAGGGTCGCGGGATCCTGCTCCAGATAGCCCTGGCCGCCATGCAGGCGCATCAGTTGTGCAGCCAATCCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGGCGTGGCCGAGCCCTGTTCACGGGAGAACTTCACCGCACCGTCCAGATCCTTGAGCAGGGTGCGTACATGCCATTTGATCGGTTCGAAGCGGCTCTC GGCCATCTGCGGGGCGAGGATCTGCAGCGGCCTGGAATCGGCGAAACCACCGGCCAGCGCCTCGGCCAGCAATGACGCATCGACCCCGGAACGCTCGGCC AGCGCCACCACTTCGGCGATCACCAGCGCATTGCAGGCGACGATCATCTGGTTGCAGGCCTTGGTCACCTGGCCGGCGCCGACACCGCCCATATGAGTCA CCCGTTGCCCCAGGTTGAGCAGGACCGGGCGTACCCTTTCGATATCCGCCGCCTCGCCACCGACCATGATCGCCAGGCTGCCAGCCTCGGCACCGGGCGT GCCGCCGGACACCGGGGCATCGACCCAGCCCATGCCGGTCGTGCTCGCCAGCTGCGCGGCCATTTCCCGGGTGGCGGTCGGCTCCAGGCTGGAGAGGTCC
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGLHFFTELPEGGQVLLTCNHNPVLVILAYLVACAGSFATLDMAERVRHVDLAAAQQRWRWVGAFCLAGGIWAMHFIGMLALQIPIETHYDLPMTLL SLLIAVIASWLAMKTLSHPKLQLWRYLLASIWIGLGICAMHYVGMAAMRSPATAYYQPDLFGLSIAIAISASLVALLLSRYLSNGSGVLHQLLKYAASLL LGGGIVAMHFTGMWALKLVLPATGTPSIAVDDNPLQLGLTIAVIALLIIGSSISAALADKKLQHKEQDLRRVNTLLSQLDQARVALQQVAHYDSLTNLIN RRGFNQLFAEKLIEKTVQGGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAGHIKSSTRSHQDVVARFGGDEFCILMSLSDRDEAQHMAQRIMSRMKEP IELAGRRMVMTTSIGISVFPDDGKTSEELLKHADLALYQSKGSGRNSLHFFSTNLKTKASLELQLEEELRNALRNEAGLTLYYQPIYDLGSRKVSKLEAL VRWRHPLHGLLAPDRFIGIAEANGLIAELDNWVLRKACEDLAALSRHGFAELKIAVNCSALNLAREELAEEIANALGSAGVAPQRLELEVTENALMGNID STVALLRQIRNLGVSLSIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDVPQSTQDKEIVQAIIVMAHTLHLQVVTEGVESVQQYEFLAQYGCDFIQGYLL SRAIPLEELPGVIDEIEQRMRPAVAAVSPLAPVRDTGGPGSRDPAPDSPGRHAGASVVQPIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|