Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS27470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCGACTCCAGGGAACTGTATTACCGAAATTATCGGGTCGACGCCAAGAGCGTTGAAAACTGGCTGCAACAGCATTTGTCGAAACGGCTCGAAGGGGAG ACGCGATGAAGATTCACATTCTGCCGCTGCAGACCCACGGCGATGACCGTGGCTCGCTGATCGCCCTGGAAGAAGGGAAAAACATCCCCTTCCCAGTCAA GCGGGTGTACTACATGTTCAATACCGGTGAAGGGGTTCGCCGCGGCTACCATGCCCATAAGACCCTCAAGCAGGTGGCAATCGCCGTACGCGGCTCGTGC CGTTTTCTGCTGGACGACGGCCGGGAAAAGATCGACATCACCCTGGACAATCCTTGCCAGGGCCTGCTGATCGAATCCTTTATCTGGCGTGAGATGTATG ACTTCTCTCCAGACTGTGTACTGATGGTTCTGGCCGATCAACTCTACGAAGAAGGCGACTATGTCCGAGATTATGCCCAGTTCATGGACATGGTCGGGCA
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| DNA Sequence for Gene |
>PCH03S_RS27470
ATGACTCACATGATGAATATCCCGTTTCTGGATTTGAAAGGCATCAATCACGAATATGCCGATCAGCTCAAAGCCGCTTGCAGCCGCGTGATCGACTCCG GCTGGTACCTGATGGGGCGCGAGCTTGAGCAATTCGAGGCCGCCTTCGCCGAATACTGTGGCAGCCGCCATGCCATCGGCGTCGCCAATGGCCTGGATGC CCTGACCCTGATCCTGCGTGCCTGGAAAGAGCAAGGCAAGCTTCAGGCCGGCGATGAAGTGATAGTGCAGAGCAACACCTTTATCGCCACTATCTCGGCC ATTCTGGCAAACGATCTGGCGCCGATCCTGGTGGATGTCGACCCTGCCACCCACAACCTGGAGATCGAGGCCGTCGAACGGGCCATCTCGGACAAAACCC GAGTGATACTGCCGGTGCATCTTTATGGCCAGCTGTCGCCGATGCCACAGATCATGGCGCTGGCCCACAAACATGGCCTGCTGGTGCTTGAAGATGCCGC CCAGGCCCATGGCGCTGAACTGGCCGGGCGCAAGGCCGGCAACTGGGGCGATGCCGCGGCATTCAGCTTCTACCCCGGGAAGAACCTCGGCGCCCTGGGC GACGGCGGTGCCATCACCACCAACGACGCCGAGCTGGCAGCCCTGGTCCGGGCGCTGGGCAACTACGGCTCACGCATCAAGTACCAGCACGATTATCAAG GGGTGAACAGCCGCCTCGATGAAATCCAGGCCGCGATGCTGGGGGTGAAGCTGGCACACCTGGACAGCGATACTGCCCGTCGACGCAGCGTCGCCCGCTA CTACAGCGAACACATCCGGCACCCGGGTATCACCCTGCCCTCGGTCACGACAGCGAGCGCCCACGTCTGGCACCTGTATGTCATTACCTGCCCATGGCGC GATCAACTGAAGGCGTATCTGGCCGAACGTGGCATCCAATGCCTGGTTCACTATCCGCTGGCGATTACCGAGCAGCGGGCCTACAGCGATCTGGCCAGGA CTTCCAAGGTGTCCCGGCCCCCGCTGCATGACTCGATCCTGTCATTGCCGATCTATCCGACATTGAGCCAGGAACAACAGCAACACATTGCCACCGCCAT CAACCAGTTCACAGCCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCCTGTTGCGAGGTGTCTAGATAGCGCCTCGCAACTGAGCGAACTGCTCGTTCGTCACATAGTCGGCGAGTGCCCGACCGGAATGATCGACAGCCTC CAGCCTAGCGCCCCTGCGCAACAACAACGGAAAGGTTCTACGACAACGCCCGGCCAGGTAGGCGTCCTTGGCATACATCAAGGGCGTCGTGCCTTTGTTG TTGCTCCGCTCCGGGTCGGCCCCTTGCTGCAACAGCCAGTCAACCACCTCATAGGCGCCCGCATAACTGGCGACGATCAGCGGCGTCCAGCCTTGCGGGT TGGCATCGTTGTAACCGGCAATATTGGCCTGCAGCGCCATCACCGCCTCCAGATCACCCAACTCACAAGCCTTGAGCATCTCCGGCAATCGATCAAAATT CAGCCGGATGTCGTAATCGATGGTGCAGAGCTCGACATAATCCTCGGTTGCGTTGATCAGGGTCCCGGCCTTGAATTGTGAACGCCCAGGCAGAATCGTC
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| Amino Acid Sequence |
>aminotransferase
MTHMMNIPFLDLKGINHEYADQLKAACSRVIDSGWYLMGRELEQFEAAFAEYCGSRHAIGVANGLDALTLILRAWKEQGKLQAGDEVIVQSNTFIATISA ILANDLAPILVDVDPATHNLEIEAVERAISDKTRVILPVHLYGQLSPMPQIMALAHKHGLLVLEDAAQAHGAELAGRKAGNWGDAAAFSFYPGKNLGALG DGGAITTNDAELAALVRALGNYGSRIKYQHDYQGVNSRLDEIQAAMLGVKLAHLDSDTARRRSVARYYSEHIRHPGITLPSVTTASAHVWHLYVITCPWR DQLKAYLAERGIQCLVHYPLAITEQRAYSDLARTSKVSRPPLHDSILSLPIYPTLSQEQQQHIATAINQFTAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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