Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS27160

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCGGCCTGATGCAGCCTTGGCGTTTCATCCGTATCAGCGACCGACCGTTGCGTGGGCAGATCCAGCAACTGGTGGAAGAGGAACGGGTGCGCACCGCCG AGGCCCTGGGCGAACGCTCCGATGAGTTCATGAAGCTCAAGGTCGAAGGCATCAATGACTGCGCTGAGGTTCTGGTGGCGGCGCTGATGGACGACCGTGA GCGGCATATCTTTGGCCGGCGCACCTTGCCGGAGATGGACCTGGCCTCGCTTTCCTGCGCGATTCAGAACCTCTGGCTGGCGGCCCGGGCCGAAGGGCTG GGCATGGGCTGGGTGTCGCTGTTCGAGCCCGTTGCCCTGGCCGAGCTGCTTGGCCTGCCGGCCGGAGCCAAGCCGCTGGCGGTGTTGTGCCTGGGTCCGG TCGGCGAGTTTTACCCGGCGCCGATGCTGGTGCTCGAAGGTTGGGCGCAAGAGCGCCCGCTGAGTGAATTGCTGTATGAAAACTACTGGGGAGTGAGTCA
DNA Sequence for Gene
>PCH03S_RS27160
ATGAGTGTGGCGTTGCTGAGTGTCGCCGGGGTAGCGCTGGACGCGTTGCTGGGCGAACCCAAACGCTGGCATCCGCTGGTGGCGTTCGGCCGTTTTGCCG ATCGCATCGAGCAACGTTTCAACTCCGGCGGTCGCGGCTGGCGCAGTCATGGCGTCACTGCCTGGGTCATCGCGGTGCTGCCGCTGACCCTGCTGGCGAC GCTGTTTTCCTGGCTGCCCTATATCGGCTGGTTGTTCGAGATCCTGGCGCTGTACTGCGCCCTCGGCCTGCGCAGCCTTGGCGAGCATGTCGAGCCGGTG GCCCAAGCCTTGCGCAGTGACGATCTGGATCAGGCGCGGCAGCGGGTCGGTTATCTGGTCAGTCGCCAGACCAGCGAACTGGATGCCACCGAAGTCGCCC GCGCCGCCACCGAGTCGGTGCTGGAGAACGGCAGCGACGCGGTGTTCGCCGCCCTGTTCTGGTTTGCCGTGGCCGGCGCGCCAGGCGTGGTGCTCTACCG CCTGAGCAACACCCTGGATGCGATGTGGGGCTATCGTAATGAGCGTTTCGAGCGTTTCGGCTGGGCGGCGGCGAAGATCGACGACCTGCTCAACTATATT CCGGCCCGCCTGGTGGCCCTGACTTACGCGTTGCTGGGCAAGACCCGCCTGGCACTGAAATGCTGGCGCCGCCAGGGGCCGACCTGGGACAGTCCGAACG CCGGGCCGGTGATGGCGGCCGGGGCCGGAGCCCTGGGTGTCGAGCTGGGCGGCGCGGCGATCTATCACGGCGAGCTGCACCAGCGGCCGCAGCTGGGCGA GGGGACGGCGGCCGATGCTTCGTCCATCGATCGTGGCTGGCAACTGGTACAGCGCGGGGTCTGGTTATGGCTGCTGATTCTCTGCGTGGGAGCTGAATTC TATGCTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACGGTGGTCGCCTGCGCAAGGCGGCCGAGCAATACGGCATCGCCGAGGCCGACTGGCTGGACCTGTCCAGCGGCCTTGCGCCCTGGCCGTGGCCGATT CCCGAGATCGGCATACGGGCCTGGGCGCGCCTGCCGGAAACCGACGATGGCCTGGAGCAGGCTGCCCGCGACTATTACGGCGCCGCCCATGTGTTGCCGG TGCCTGGCTCCCAGGCGGCGATCCAGCTGCTTCCGCGTTTGCGCCGCGCCGGCAAGGTCGGCGTGCTGTCGCCCTGTTATGCCGAGCACGCCGAAGCCTG GCGCCGCAGCGGCTACATCGTGCGTGAAGTGCTGGAACAGGAAGTGGACTTTTTCCTCGACAGCCTGGACGTGCTGGTGGTGGTCAACCCGAACAATCCC ACGGGCTTGAGCCTGACCCCGGAGCGCCTGCTGGACTGGCATGCGCGCCTGGCGCAGCGCGGTGGCTGGCTGGTGGTCGACGAAGCCTTCATGGACAACA
Amino Acid Sequence
>cobalamin biosynthesis protein CobD
MSVALLSVAGVALDALLGEPKRWHPLVAFGRFADRIEQRFNSGGRGWRSHGVTAWVIAVLPLTLLATLFSWLPYIGWLFEILALYCALGLRSLGEHVEPV AQALRSDDLDQARQRVGYLVSRQTSELDATEVARAATESVLENGSDAVFAALFWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDLLNYI PARLVALTYALLGKTRLALKCWRRQGPTWDSPNAGPVMAAGAGALGVELGGAAIYHGELHQRPQLGEGTAADASSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site