Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, PCH03S_RS29370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTGCAAGAACGCCTGCAACCCTCGTTGCTCGATCGCCTGACCGACGATGATCCGCACAACCCGAAAGAAGCCGCCGAGCGCCGCGTCATGTCGCTGA CCCAGCTCAAAGCGTGCGTGCTGCGCGATCTGGCCTGGCTGTTCAACACCTGCGTGCTGTTCGATCCGGAGCAGGCCGCGCAGATGCCGGCGGGCAACTC GGTGCTGAATTTCGGCCTGCCACCCCTGGCCGGACATACCGCCTCGAGTGTCGATGTACAGGCCATCGAAGCCTTGTTCAGCGACACCATCGCCACCTTT GAGCCGCGCATCCTCAAAGGCTCGTTGAAGGTTCGCGCGCGACTCGACGGCAATGACATGAGTCACAACGCCCTGAGCTTCGAGATCGAGGGCGATCTGT GGGCCGAGCCGGTGCCCCTGCGCTTGCTGCTCAGCACCGCCCTCGACCTGGAAACCGGGCACGTCAAGGTGACGCCGGCCGAGCCCGCCAGGAGACGCCA
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| DNA Sequence for Gene |
>PCH03S_RS29370
ATGAACCCGCGCATGCTCGAGTATTACAACCAGGAGCTGCAGCATATCCGCGAGAGCGCCGCCGAGTTCGCCCAGGAGTTCCCCAAGATCGCCAGCCGCC TGACCCTGTCCGGCATCGAATGCGCCGATCCCTATGTCGAGCGTCTGCTGGAGGGTTTCGCCTACCTGAGCGCGCGGGTCCACCTGAAGCTGGACGCCGA ATACCCGACCTTCACCCACAATCTGCTGGAAATCGCCTACCCCCATTACCTGGCGCCAACGCCTTCGGTGGTGGTGGTCCAGCTGGTCGCCGACCCCAAC GAGGGCTCACTGACCAGCGGCTTCAGGGTCGAACGCCAGGCCGCCCTGCGTGGCCAGCTGGGCCATGGCGAGCAGACCGCCTGCGAATACCGCAGCGCCC ATGCGGTGACGCTGTGGCCATTGCAGGTCGGCCATGCCGAATACTTCGGCAACCCGGCGGCGACCCTCGGCCGCCTGGCCGCCAGCGAACCCAGGGCCAA GGCCGGGCTGCGCCTGCGCTTGCGCTGCGGTGCCGGGTTGCCGTTCAACGCCCTGGCGCTGGACAGCCTGCCGCTCTACCTCAATGGCGCCGACGAGCAA CCTTTTCGTCTGTACGAGCAGTTGCTCGGCAATGCCTGTGCCGTGTTTATCAAGAGCGTCGACGGCGACTGGGCCGAGCGCTTGCCTGTGGAGAGTCTCA AACCCCGCGGCTTCGACGATCAGGACGCGGTGCTGCCGGTGGTGCCCCGGGCCTTCCAGGGGTATCGCCTGCTGCAGGAATATTTCGCCCTGCCCAATCG TTTTTTGTTCGTCGACTTCACCGGGCTGAGCGCCGGTGTGCAGCGCTGTGGCAGCCAGGAACTGGAGTTGGTGGTGCTGTTCGATCGCCTCGACAGCACC CTGGAAGGCACGGTATCGGCGGCCCAGTTCGTGCCCTTCTGCACGCCGGCGGTGAACCTGTTTCCACGCCGCGCCGATCGAATTCACCTGAGCGAGCGGG TGCATGAGCACCAGGTGATCGCCGACCGCACCCGGCCGCTGGATTTCGAGATCCATTCCCTGACCCAGGTCACCGGCCATGGCAGCGGCCCCGAGCAGCC GTTCCAGCCGTTCTATGCGATCCGCGACCCGCTGCGTTATGGCCGCGAGCAGGCCTACTACATCGTCCGCCGCGAGCCGCGTCGCCTGTCCAGCCAGCAA CGGCGCCGCGGGCCCCGCTCGACCTATATCGGCAGCGAAACCTTCGTCTCGCTGGTGGATGTCAACCAGGCGCCCTATCGCCACGACTTGCGCCAGCTCG GCCTCAGCGCCCTGTGCACCAACCGCGACCTGCCGTTGCTGATGCCAGTGGGGACCGGCAAAAGCGATTTCACCCTGGAAGACAGCGCCCCGGTGCTGGC CGTGCGCTGCCTGGCCGGGCCAAGCCGGCCACGGCCGAGCCGCGCGCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTATCGCTGAACTACCTGTCG CTGAGCGAACAGGGCCAGGGGGCCGCGGCGCTGCGCGAATTGCTGCGCCTGTACGGCGACCCCGGCGATTCGGCGCTGCAGTTGCAGATCGAAGGCCTGC GCCAGGTGCGCAGCACGCCCTGCACCCGCCGGTTGCCGATGCCGGGGCCGATCGTGTTTGGCCGTGGCCTGGAGATCAGCCTGGAGTTCGACGAAAACGC CTTCCGCGGCACCGGCGTGTACCTGCTGGGCGCGGTGTTCGAGCGTTTCCTGGCCCGTTACGTGTCGATCAACAGCTTCACCGAAACCGTGCTGCGCACC ACCGAGCGCGGCGAAATCATGCGATGGCAGGCGCACCCCGGATGTCGACCGAACCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCGCTGCACAGCATCGATCGGATGGCCGACGAGCCCTGGGCCTACGACTTCTTCCAGGCGCTGCGGCGCATCGAGTGCGAGGCCAGCGACCGGCCGCG CATCGGCCATTCCCTGCGCTTGCACGACGACCCGCTGCGCCTGGGGCAGAGACCCGACTGCGGCTTTGCCCCCTCGACCCTGGCCAGTATCGAGGCCGAC CCCGAGGGCGCCGCGCCGCGCATCGAGCAGTTCTTTTTCGGCCTGACCGGGCCCAACGGCCCGCTGCCGCTGCACCTGACCGAATACGCCCGCGATCGCC AGCGCAACAGCGGCGACGCCAGCTTCACGCGCTTTCTCGACGTGTTCAATCACCGCTTGCTGTGCCTGTTCTACCGCGCCTGGGCCGAGGCGCGGCCGAC CGTCAGCCACGACCGCCCCGACCACGACTATTGGTCGATGCGCCTGGCCGCACTGTCCGGACGGGGCATGACCAGCCTGCTCGGCCAGGGCCCGATCGCC
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| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRMLEYYNQELQHIRESAAEFAQEFPKIASRLTLSGIECADPYVERLLEGFAYLSARVHLKLDAEYPTFTHNLLEIAYPHYLAPTPSVVVVQLVADPN EGSLTSGFRVERQAALRGQLGHGEQTACEYRSAHAVTLWPLQVGHAEYFGNPAATLGRLAASEPRAKAGLRLRLRCGAGLPFNALALDSLPLYLNGADEQ PFRLYEQLLGNACAVFIKSVDGDWAERLPVESLKPRGFDDQDAVLPVVPRAFQGYRLLQEYFALPNRFLFVDFTGLSAGVQRCGSQELELVVLFDRLDST LEGTVSAAQFVPFCTPAVNLFPRRADRIHLSERVHEHQVIADRTRPLDFEIHSLTQVTGHGSGPEQPFQPFYAIRDPLRYGREQAYYIVRREPRRLSSQQ RRRGPRSTYIGSETFVSLVDVNQAPYRHDLRQLGLSALCTNRDLPLLMPVGTGKSDFTLEDSAPVLAVRCLAGPSRPRPSRAHDASAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDPGDSALQLQIEGLRQVRSTPCTRRLPMPGPIVFGRGLEISLEFDENAFRGTGVYLLGAVFERFLARYVSINSFTETVLRT TERGEIMRWQAHPGCRPNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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