Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS29540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 549 | 720 | 4.5E-59 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 561 | 717 | 6.5173E-68 |
| Coils | Coil | Coil | - | - | 5 | 25 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 558 | 718 | 6.5E-50 |
| Coils | Coil | Coil | - | - | 525 | 559 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 421 | 718 | 2.0E-73 |
| Coils | Coil | Coil | - | - | 437 | 464 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 565 | 718 | 2.35E-50 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 554 | 719 | 4.9E-53 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 560 | 716 | 1.5E-46 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 550 | 719 | 1.1E-58 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 201 | 250 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.