Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS28440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTGGTAAAGCATGCCGATGGTCAGCGGGATCTTGTCGCCGCGTCCCTTGGCCCGGCGCTTGAGGAAGACGTCGTAGCCTTCGGGCTGGAAATAGCGGT AGGCGTCGTAGTCGATAAAGTCGATGACGAACAGTTCTTCCAGTTCCTGCATCAGTTGTTCGGCGTCCGCGCCATCGCAGCCCAGGTCGAGGTTGATGGC GGTCTTCAGGCTGATGCCTTTGCGTTCGGGCAGGCCGATTTCTTCGTGCAGCAACTGCATGAGCTGGCGCATGGCCGGGTCTTCAGGGAAGCCGGGGGCG AGGTACATGGTGGGTCGTCCGAAAGGTCTGTCGGTGGTGCCAATCGGCCTCCAGTTTAGGGGCAATTTCTGGGCCTGAACGAAAAAGAAAAGTCGCTCGA CCAACTCGGATTTGCCTGACAGCCAAGGTCCCCTCGCACTGGTTAACGTGAGATCCCCCGGTTGAAGACCGGGGTTTCCCAGGCGACCGAGCAAAGGACT
|
|
| DNA Sequence for Gene |
>JM49_RS28440
ATGGCCCGCAACAAGGATGTGCCCCAGGTATGGCAGCGCTACGACGCTGACGGCGGTGGTTATCGTCGCCTGCGCGATATGACTGCGAGCGAATTGGCTG AGCGTGATGAGGCGCAGCAGGGTTACGAGCAGATGCTCGCTCGCCAGCAGGCCTATGAAGAGCAGCTGGCGACTACACGGGTGGAATCGCAACCAACGCC CGTCGGTTGCGTGTTCACCAAGTCTTGCAAGCTGCCGGACGCAATCATCGACTACGTCACCCCGACAGGCTTCATACCCACTGATTCGGTGGCGAATTAC GGCGCGTTGACGCTGCTGGGCGGTCGTGAGGTCGAGGCGGGTGGGGGCGTGGCCCTCAAGTGCATCAGCGGTGCGCTGCCGGCCAATCTCGGTACCTTGA CCCTGGGTGGTGTCTCCGCGGCGACTGGTACCACCGGCAGTGGCCTGGGGCTGATCTCCTCGGGCGTGGCGGCCGGTGCATTGCTGGGGTTGGTGGCTTT GCTCGCTCCATCGAGCCTGGGTGATGGCGCGCTGTACAGCGAAGAGCAGCTACGCAATCTCAAGCAAGCTCGCACCCGGCTACGCCTGCGAGTTGAGCAG CAGGCCGATGGTAGCCTCAAGGGCTACGGCTTCAACACCCAGGGGCGCCGCGAGTGGGAAATGATTCCGGTGGCTCAGTTCAAGGCCCGTGGCGAGCATC AAGTGGCCGACCTGGGCGATGGAATCACCCTCACCTGGACCCCGGCAGTGAACCCTTCGAGCACCATAGGGATACCACCGCTGGAAGCGGCGCCGCAGAC ACCACCGATCTGGATTTTCCCGCCGACCGAAGCGGCGGAGCGGATCATCGTGAGTCCGATTTATCCGCCGGAGTATCGGGATTTTATTCTGGTGTTTCCG GTGGGGTCTGGAGTTCAGCCGCTGTACATTGTGCTGAGCACACCGGTGTCAGGATATGTTCTTGCACCGAGCGCCTTGCCTGGCTTTCCTGATGCGATTA GGGCAAAGCGGAAAACCTCTGTCCAAGGAAGTGGTGGGCGACGTAAACGATGGAAAACTGCAAAAGGACTAATTTTAGAATGGGACTCTCAACATGGCGC AGTTGAAATGTATGACAAACGCGGCCGCCATCTTGGCGAGTTTGATCCGCTTACTGGCGAACAAACTAAAGCAGCCGACAGAACAAGGAGCATAGAGCCA TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGTTTCTCGTTGAGGCTTTTGACAAAAAAACCGAGCTGTTGGTTTTTGACGTAGAACTGCCGGCCAATTGTGACGAGCGTGTGAAAGAGATCATGGGTTG GACAGTGGCCCCTCAAGGTTGGGAAGGCTATGACCTGACTGCAGTGCAGTTGACTGAGTTTGAAAAGATCACTGAGAGGAAATTTGATCTCTCTGCATAT GATTTCCAACTGACGGCTAATGGCTGAGTACTTCCGGGTTTTGTGCGGCTTAGTCTTGATGAACCGGAACCAGCTGGCCGACATTCGTTCGCGGGAACGA TAAAAAATATGAAAAGCTATTTTTCTGATTACACGGAGCATGAATTCATAGACTTGCTCGACCGTATCATTGGAGGTGAAGGCACTGAAAAAGAAGTGAA TGCGCTTGTATTCCATTTCGAAAAGGTGAGCGAACACCCAGCAGGCTCCGATCTGATTTTTTACCCAGAGAATGGTGCCGATGACTCGTCCGAAGGCATC
|
|
| Amino Acid Sequence |
>toxin
MARNKDVPQVWQRYDADGGGYRRLRDMTASELAERDEAQQGYEQMLARQQAYEEQLATTRVESQPTPVGCVFTKSCKLPDAIIDYVTPTGFIPTDSVANY GALTLLGGREVEAGGGVALKCISGALPANLGTLTLGGVSAATGTTGSGLGLISSGVAAGALLGLVALLAPSSLGDGALYSEEQLRNLKQARTRLRLRVEQ QADGSLKGYGFNTQGRREWEMIPVAQFKARGEHQVADLGDGITLTWTPAVNPSSTIGIPPLEAAPQTPPIWIFPPTEAAERIIVSPIYPPEYRDFILVFP VGSGVQPLYIVLSTPVSGYVLAPSALPGFPDAIRAKRKTSVQGSGGRRKRWKTAKGLILEWDSQHGAVEMYDKRGRHLGEFDPLTGEQTKAADRTRSIEP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|