Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS25535

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03591
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03591
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcp03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcp00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcp00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 3 144 1.06E-47
CDD cd02393 KH-I_PNPase - - 552 621 1.12065E-27
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 620 691 4.6E-16
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 15 144 5.2E-19
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 296 489 2.73E-50
NCBIfam TIGR03591 JCVI: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 9 692 0.0
CDD cd04472 S1_PNPase - - 623 690 2.42466E-33
FunFam G3DSA:2.40.50.140:FF:000023 Polyribonucleotide nucleotidyltransferase - - 623 693 1.9E-32
PIRSF PIRSF005499 PNPase IPR012162 Polyribonucleotide nucleotidyltransferase 1 700 0.0
FunFam G3DSA:3.30.230.70:FF:000001 Polyribonucleotide nucleotidyltransferase - - 2 235 1.0E-102
SMART SM00322 kh_6 IPR004087 K Homology domain 553 618 1.7E-13
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1 IPR036612 K Homology domain, type 1 superfamily 551 622 3.1E-28
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I) IPR036612 K Homology domain, type 1 superfamily 556 641 6.42E-24
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 623 694 8.6E-26
CDD cd11364 RNase_PH_PNPase_2 - - 324 542 0.0
FunFam G3DSA:3.30.230.70:FF:000002 Polyribonucleotide nucleotidyltransferase - - 237 550 0.0
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 621 691 6.9E-24
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 325 457 1.2E-22
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 244 321 2.7E-22
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 145 236 2.09E-27
PANTHER PTHR11252 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE IPR012162 Polyribonucleotide nucleotidyltransferase 3 696 0.0
FunFam G3DSA:3.30.1370.10:FF:000001 Polyribonucleotide nucleotidyltransferase - - 551 619 1.1E-24
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 2 694 30.204615
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 147 211 1.6E-11
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 1 238 2.4E-83
SUPERFAMILY SSF46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily 241 322 3.14E-16
CDD cd11363 RNase_PH_PNPase_1 - - 5 234 2.03501E-118
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 460 529 2.0E-5
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 615 693 1.36E-21
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 559 613 4.2E-12
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 239 550 0.0
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 451 549 3.79E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.