Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS25470

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01427
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022877 protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd05569
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF52794
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005351 carbohydrate:proton symporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01427
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd05569
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pcp01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcp00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcp01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pcp02060 Phosphotransferase system (PTS) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00829 JCVI: fructose PTS transporter subunit IIB IPR003353 Phosphotransferase system, fructose-specific IIB subunit 123 206 4.3E-34
FunFam G3DSA:3.40.50.2300:FF:000014 PTS system fructose-like transporter subunit IIB - - 116 222 2.5E-36
SUPERFAMILY SSF52794 PTS system IIB component-like IPR036095 PTS system IIB component-like superfamily 121 218 5.58E-35
Gene3D G3DSA:3.40.50.2300 - - - 1 103 3.0E-20
Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IPR003501 Phosphotransferase system, EIIB component, type 2/3 124 205 8.0E-18
Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IPR003501 Phosphotransferase system, EIIB component, type 2/3 5 93 2.8E-9
Gene3D G3DSA:3.40.50.2300 - - - 111 220 3.2E-39
NCBIfam TIGR01427 JCVI: fructose-specific PTS transporter subunit EIIC IPR006327 Phosphotransferase system, fructose IIC component 232 566 0.0
Pfam PF02378 Phosphotransferase system, EIIC IPR003352 Phosphotransferase system, EIIC 247 510 2.9E-19
CDD cd05569 PTS_IIB_fructose IPR003353 Phosphotransferase system, fructose-specific IIB subunit 122 217 4.7559E-33
PANTHER PTHR30505 FRUCTOSE-LIKE PERMEASE - - 108 571 0.0
SUPERFAMILY SSF52794 PTS system IIB component-like IPR036095 PTS system IIB component-like superfamily 2 103 1.01E-22
CDD cd05569 PTS_IIB_fructose IPR003353 Phosphotransferase system, fructose-specific IIB subunit 3 95 2.31523E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.