Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS15075

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details]
DNA Sequence Upstream of Gene
AGGACGGAAAACTCTCCGGCGACAAGAACAAGGGGCTGTCGATTCGCGTCGAAGGCACTCCTTACGAGCGCCAGGGCTCCTTGCTGTTCACCGACGTGGC GGTGGATCGCGGCACCGGGCAGATTGTCCTGCGCGGCAAGTTCGACAACGCCGACGGCACCCTGCTGCCGGGCATGTATGTGCGGGTGACGACGCCCCAG GGCACGGATAACCAGGCGATCCTCGTGCCGCAACGCGCGGTGCAACGTACCAGCGATGGCAGCGCCCAGGTGCTGGTGATCGGCGCGGACGAGCGGGTCG AGGCGCGCGCGGTGCGCACCGGCGCCATGCAGGGTTCGCGCTGGCAGATCAGCGGAGGCTTGAAGGCGGGGGACCAGGTCATCGTCGGTGGCCTGGCCGG CCTGCAACCGGGTGTCAAGGTCGTGCCCAGCCAGGCCCAGGCCCAGGCTCAGATGCCTGACTCGAAACAGTAAGGCCGAGTTCGCCGCGAGGATTTTCCA
DNA Sequence for Gene
>JM49_RS15075
ATGTCTCAATTCTTCATCAAGCGCCCGAACTTCGCCTGGGTCGTGGCGCTGTTCATTTCACTGGCGGGCCTGCTGGTCATTTCCAAGCTGCCCGTAGCGC AGTACCCCAGCGTCGCGCCGCCGCGGATCACCATCACTGCCACCTATCCCGGCGCCTCGGCGAAGGTACTGGTGGATTCGGTCACCACCGTGCTCGAGGA GTCGCTCAACGGGGCCAAGGGCCTGCTCTATTTCGAGTCGACCAACAACTCCAACGGCGTCGCCGAGATCGTGGTCACGTTCCAGCCAGGGACCGACCCG GACCTGGCCCAGGTGGACGTGCAGAACCGCCTGAAGAAAGCCGAGGCGCGCATGCCGCAGGCGGTGCTGACCCAAGGCCTGCAGGTCGAGCAGTCCAGCG CCGGTTTCCTGCTGATCTACACGCTCAGCTACAAGGAAAGCAGCGCGAATGGCGACACCACGGCGCTGGGCGACTACGCCGCGCGCAACATCAACAACGA GCTGCGGCGCCTGCCCGGCGTCGGCAAGTTGCAGTTCTTCTCCTCCGAAGCGGCCATGCGCGTGTGGATCGATCCACAGAAACTGGTGGGCTACGGGCTG TCCATCGACGACGTGAGCAACGCCATTCGTGGCCAGAACGTCCAGGTGCCGGCCGGTGCCTTCGGCGCCGCCCCGGGCACTTCGGAGCAGGAGTTGACCG CGACGCTGGCGGTCAAGGGCACCCTGGACAATCCGGCCGAGTTTGGCCAGATCGTGCTGCGCGCCAATGAAGACGGCTCGCTGTTGAAACTGTCCGATGT CGCGCGCCTGGAAGTGGGCAAGGAGAGCTATAACCTGTCCTCGCGCCTGAACGGCAACCCGACCGTGGGCGGCGCGATCCAGCTGTCGCCTGGCGCCAAC GCCATCGAGACCGCGACCCTGGTGAAAGCGCGCCTCGCCGAGCTGTCGGCGTTCTTCCCCGAGAACATGGAGTATTCCGTTCCCTACGACACCTCGCGCT TCGTCGACGTGGCCATCGAGAAGGTGATCCACACCCTGATCGAGGCGATGGTCCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACGTGCGCTATAC CCTGATTCCATCGATCGTCGTGCCGGTGTGCCTGCTGGGTACGCTGCTGGTGATGTATCTGATGGGCTTCTCGGTGAACATGATGACCATGTTCGGCATG GTCCTGGCCATCGGTATCCTGGTGGACGACGCCATCGTGGTGGTGGAAAACGTCGAACGGATCATGGCCGAAGAGGGGCTGTCCCCGGTCGATGCGACGA TCAAGGCGATGCAGCAGGTGTCCGGCGCCATCATCGGCATCACCCTGGTGTTGTCGGCGGTGTTCCTGCCACTGGCGTTCATGGCCGGTTCGGTGGGGGT CATCTACCAGCAGTTTTCGGTGTCGCTGTCGGTATCGATCCTGTTCTCCGGTTTCCTCGCGCTGACCTTTACCCCGGCGCTGTGCGCCACGCTGCTCAAG CCGATCCCCGAGGGGCACCACGAGAAGGGTGGTTTCTTCGGCGCCTTCAACCGTGGTTTCGCCCGCGTCACCGAGCGCTACTCGGTCCTCAACTCCAAGC TGGTGGCCCGCACCGCGCGTTTCATGCTGGTGTACGTCGGCATCATCGGCGTGCTCGGTTACTTCTATCTGCGCCTGCCGGAAGCCTTCGTGCCTTCGGA AGACCTGGGCTACATGGTGGTCGATGTGCAACTGCCGCCCGGCGCGGCGCGCTCCCGTACCGACGCCACCGGTGCAGAACTCGAACGTTTCCTCAAGTCC CGCGAGGCCGTGGCTTCGGTGTTCCTGGTGTCGGGCTTCAGCTTCTCCGGCCAGGGCGACAACGCTGCGCTGGCATTCCCGACGTTCAAGGACTGGTCGG AACGTAATGCGCAACAGTCGGCCGAGGCGGAAATCGCGGCGCTGAACGAACACTTCGCGGTCCCTGGCGACGGCACCATCATGGCCGTGTCGCCACCGCC TATCGACGGCCTGGGCAACTCCGGCGGTTTCGCGTTGCGCCTGATGGACCGTGGCGGCCTGGGTCGCGAGGCGTTGCTGCAAGCCCGGGATACACTGCTG GGCCAGCTCCAGGGCAATCCCAAGTTCCTCTACGCGATGATGGAAGGCCTGGCCGAAGCGCCGCAACTGCGCCTGGTGATCGACCGTGAGAAGGCACGCA CCCTGGGTGTGAACTTCGAGACCATCAGCGGCACGCTGTCCTCGGCTTTCGGTTCGAACGTGATCAACGACTTCACCAACGCCGGTCGCCAGCAGCGCGT AGTGATCCAGGCCGAGCAGGGCTCGCGGATGACCCCGGAGAGCGTGCTCAAGCTGTATGTGCCCAACGCCAAGGGCGACCTGGTTCCGCTCAGCGCCTTC GTGACCACACGCTGGGAGGACGGGCCGGTACAACTGGTGCGCTACAACGGCTATCCGTCGATCCGTATCGTGGGTGACGCCGGCCCCGGTTTCAGTACCG GCCAGGCCATGGCGGAAATCGAGCACCTGGCCGCGCAACTGCCGGCGGGTATCGGCTACGAATGGACCGGTCTGTCCTACCAGGAAAAGGTCTCCAGCGG CCAGGCCACGCAGCTGTTCGCCCTCGCGATCCTGGTGGTGTTCCTGTTGCTGGTAGCCCTTTACGAGAGCTGGGCGATCCCCCTGACGGTGATGCTGATC GTCCCGATCGGTGCGATCGGCGCGGTGCTCGCGGTGATGGTGGTCGGCCTGCCGAACGACGTGTACTTCAAGGTCGGCCTGATCACCATCATCGGCCTGG CGGCGAAGAACGCGATCCTCATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGCGCGACGCGGCCATCGAGGCGGCCCGCCTGCGCTT CAGGCCGATCATCATGACCTCCATGGCCTTCATTCTCGGCGTGGTGCCCCTGGCGCTGGCCACCGGCGCGGGCGCGGCCAGCCAGCGTGCGATCGGCACC GGGGTGATCGGCGGGATGCTCAGCGCGACGCTGCTGGGTGTGCTGTTCGTACCGATCTGCTTTGTCTGGGTGCTGTCGCTGTTGCGCAGCAAGCCGGCCC CCATCGAACAACCGGCCGCGGCCCAGGAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTGCATGCGGATCTCAGCCTTTTCTACGCTTCTGATCGCCATGGCGCTGGGGGGATGCTCACTGGCTCCCACCTATGAACGTCCCGTCGCGCCGGTGGCC GACAGCTGGAGCGGCGAAGCCGCCCAGCGCGGCAGCGCCATCAACGACCTGGCCTGGCAGACGTTTATCGTCGACCCGCAGTTGCGGCGCCTGATCGGCA CCGCGCTGGATAACAACCGCTCGCTGCGCCAGACGCTCCTGGACATCGAGCAGGCCCGCGCGCAGTACCGCATCCAGCGCGCCGACCGGGTGCCCGGGCT CAACGCGGGCGCCTCGGGCAATCGCCAGCGAGTGCCGGCCGACCTGTCCAACAGCGGCAGGGCGGGAGTGGCCAGCAACTATCAGGTGGGCCTGTCGCTG CCGGAATACGAGCTGGACCTGTTCGGCCGGGTCAAGAGCCTCAGCGATGCCGCGCTGCAGGAGTACCTGGCCACCGAGGAGGCCGGGCGCGCGGCGCAGA
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSQFFIKRPNFAWVVALFISLAGLLVISKLPVAQYPSVAPPRITITATYPGASAKVLVDSVTTVLEESLNGAKGLLYFESTNNSNGVAEIVVTFQPGTDP DLAQVDVQNRLKKAEARMPQAVLTQGLQVEQSSAGFLLIYTLSYKESSANGDTTALGDYAARNINNELRRLPGVGKLQFFSSEAAMRVWIDPQKLVGYGL SIDDVSNAIRGQNVQVPAGAFGAAPGTSEQELTATLAVKGTLDNPAEFGQIVLRANEDGSLLKLSDVARLEVGKESYNLSSRLNGNPTVGGAIQLSPGAN AIETATLVKARLAELSAFFPENMEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLLVMYLMGFSVNMMTMFGM VLAIGILVDDAIVVVENVERIMAEEGLSPVDATIKAMQQVSGAIIGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLSVSILFSGFLALTFTPALCATLLK PIPEGHHEKGGFFGAFNRGFARVTERYSVLNSKLVARTARFMLVYVGIIGVLGYFYLRLPEAFVPSEDLGYMVVDVQLPPGAARSRTDATGAELERFLKS REAVASVFLVSGFSFSGQGDNAALAFPTFKDWSERNAQQSAEAEIAALNEHFAVPGDGTIMAVSPPPIDGLGNSGGFALRLMDRGGLGREALLQARDTLL GQLQGNPKFLYAMMEGLAEAPQLRLVIDREKARTLGVNFETISGTLSSAFGSNVINDFTNAGRQQRVVIQAEQGSRMTPESVLKLYVPNAKGDLVPLSAF VTTRWEDGPVQLVRYNGYPSIRIVGDAGPGFSTGQAMAEIEHLAAQLPAGIGYEWTGLSYQEKVSSGQATQLFALAILVVFLLLVALYESWAIPLTVMLI VPIGAIGAVLAVMVVGLPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLRDAAIEAARLRFRPIIMTSMAFILGVVPLALATGAGAASQRAIGT GVIGGMLSATLLGVLFVPICFVWVLSLLRSKPAPIEQPAAAQE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site