Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGGTTCGAGTTCCCGAAAGAGGTGTCTATTCTTGCCGTACCAAAGGCCGTTACCTTGCAAAAGTCCGACTTTGATTACAGTGCCACCTATACCAAGGATG GAGATGCGGTGGTCATCAAGCGTCGCCTGAAGTTCACTCATCCTGATGCAGTGTGCAGCCCTGAAGAGTTTGCGGGGATGAAACCAGTGATTGAAGGCAT GGTTAACGATCTAAAAAGCCAGATTATCGTGCAAACTTTATAACGGCTTATTCGTAACGACCTGTACTCAATTGGCTGTTAACCAAGCAGGTGCAGCACC CATCATTTACCGCAGCATTTAAAACCCGGAAATCCCACGAAAGTAAGGATTTCCGGGCTTTCCTTTGCCTGAAGATACGTATCGGTCTCAACGAAATATC GCGGTGCCCCAGCCAAAGTCGACTGGCCTTGATCGGCTATCTCCTGATACAAACCCCGGGTTGCCGTCCTTATCTTTTTGACGTCGGAGCATCATTCAAC
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DNA Sequence for Gene |
>JM49_RS13465
ATGAGCCAATGGCCTGACACCCGTATTCTCGACCTGCTGGGCATCGAGCTGCCGATCATCCAGGCGCCCATGACCGGTGCCACCACTACGGCCATGGTGA TCGCCGCCGCCCAGGCCGGCGCGCTGGGCTCCCTGCCCTGCGCCATGCTCAGCCCCGAGCAGATTCGCCAGGACGTGCAGAGCATTCGCCAGGCTACATC TGCCCCGCTGAACCTGAACTTCTTCTGCCACCAGAACCCGACACCCGACCCGGAACGGGAAATCCGCTGGAAAAACGCCCTGGAACCCTACTACCGCGAA CTCGGCGCCGACTTCGAGGCGCCGACCCCGGTCAGCAGCCGCGCGCCCTTCGACGCCGTCAGATGCGAGCTGGTGGAAGAGCTGCGCCCGGAAATCGTCA GCTTCCACTTCGGCCTGCCGGAGCCGGCCCTGCTCGCGCGGGTCAAGGCCACCGGGGCGAAGATCCTGTCGTCGGCCAGCACCGTCGATGAAGCCGTCTG GCTGGAACAGCATGGCTGTGACGCAATCATCGCCATGGGCTACGAGGCCGGCGGCCATCGGGCGATCTTCCTCAGCGAAGACCTCAACACCCAGGTCGGC ACCATGGCCCTGGTGCCGCAGATCGCCGATGCGGTGCGGGTGCCGGTGATTGCCGCCGGCGGGATCGGCGACGCCCGCGGCATAGTCGCCGCCTTCGCCC TCGGCGCCTCGGCGGTGCAGCTGGGCACCGCCTACCTGTTCACCCCGGAAGCCAAGGTCAGCGCCGCCCACCACCGGGCCCTGCGCACCGCCAAGGAGAG CGAAACAGCCCTGACCAACCTGTTCACCGGCCGCCCGGCGCGGGGCATCGTCAACCGGGTGATGCGCGAGATCGGCCCGATCAGCCCGCTGGCCCCGGCC TTTCCCCTGGCGGGCGGCGCGCTGATGCCGCTGCGCGCCAAGGACGAAGCCGACTTCGCCAACCTCTGGTCCGGCCAGGCTCTGCGCCTGGGGTTGGAAC TGCCGGCCTACGAGCTCACCCGCACGCTGGCCGAGCAAGCCCTGGCCAAGCTCAACAGAAGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AAACCCCAGGGCCGCGACCTGGTTCGCGGCCCGACTCCCACTCCAGCTCCTGCCCCAGTTCCGTTCGCTGGCGATTCGCTATATATTTCCGTATACAGCG TTTCATCCACCCCCGGTGCAGTCCCTTTCCATATCCCCCACTGCCCAACGTCCCTTCGCCAATGGAGCTGTTCATGAACCGTCATCTCTCAGGTTTTGCC CCGACCTGCCTTGCCGCTGTGCTCGCCGCCTGCGCTTTCGGCTCGGCCCAGGCCGATGAAGTCCAGGTGGCGGTCGCCGCCAACTTCACCGCGCCGATCC AGGCCATCGCCGCCGACTTCGAGAAAGACACCGGGCACAAGCTGGTGGCCGCCTATGGCGCGACCGGGCAGTTCTATACCCAGATCAAGAACGGCGCGCC GTTCGAAGTGTTCCTCGCCGCCGACGACAGCACTCCGGAAAAACTCGAAAGCGAAGGCGCCACCGTCAAGGGCTCGCGCTTCACCTACGCCATCGGCACC
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Amino Acid Sequence |
>2-nitropropane dioxygenase
MSQWPDTRILDLLGIELPIIQAPMTGATTTAMVIAAAQAGALGSLPCAMLSPEQIRQDVQSIRQATSAPLNLNFFCHQNPTPDPEREIRWKNALEPYYRE LGADFEAPTPVSSRAPFDAVRCELVEELRPEIVSFHFGLPEPALLARVKATGAKILSSASTVDEAVWLEQHGCDAIIAMGYEAGGHRAIFLSEDLNTQVG TMALVPQIADAVRVPVIAAGGIGDARGIVAAFALGASAVQLGTAYLFTPEAKVSAAHHRALRTAKESETALTNLFTGRPARGIVNRVMREIGPISPLAPA FPLAGGALMPLRAKDEADFANLWSGQALRLGLELPAYELTRTLAEQALAKLNRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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