Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS12590
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCGGTGGGTACCGGCAAAAGCGATTTCACCCTGGAAGACAGCGCCCCGGTGCTGGCCGTGCGCTGCCTGGCCGGGCCAAGCCGGCCACGGCCGAGCC GCGCGCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTATCGCTGAACTACCTGTCGCTGAGCGAACAGGGCCAGGGTGCCGCGGCGCTGCGCGAATT GCTGCGCCTGTACGGCGACCCCGGCGATTCGGCGCTGCAGTTGCAAATCGAAGGCCTGCGCCAGGTGCGCAGCACGCCCTGCACCCGCCGGTTGCCGATG CCGGGGCCGATCGTGTTTGGCCGTGGCCTGGAGATCAGCCTGGAGTTCGACGAAAACGCCTTCCGTGGCACCGGGGTGTACCTGCTGGGCGCGGTGTTCG AGCGCTTCCTGGCCCGTTACGTGTCGATCAACAGCTTCACCGAAACCGTGCTGCGCACCACCGAGCGTGGCGAAATCATGCGATGGCAGGCGCACCCCGG
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| DNA Sequence for Gene |
>JM49_RS12590
ATGTCGACCGAACCTCTGAAACCGCTGCACAGCATCGATCGGATGGCCGACGAGCCCTGGGCCTACGACTTCTTCCAGGCGCTGCGGCGCATCGAGTGCG AAGCCAGCGACCGGCCGCGCATCGGCCATTCCCTGCGCTTGCACGACGACCCGCTGCGCCTGGGGCAGAAACCCGACTGCGGCTTCGCCCCCTCGACCCT GGCCAGCATCGAGACCGACGCCGAGGGCGCCGCGCCGCGCATCGAGCAGTTGTTTTTCGGCCTGACCGGGCCCAACGGCCCGCTGCCGCTGCACCTGACC GAATACGCCCGCGATCGCCAGCGCAACAGCGGCGACGCCAGCTTCACGCGCTTTCTCGACGTGTTCAATCACCGCTTGTTGTGCCTGTTCTACCGCGCCT GGGCCGAGGCACGGCCGACCGTCAGCCACGACCGCCCCGACCACGACTATTGGTCGATGCGCCTGGCCGCGCTGTCCGGGCGGGGCATGACCAGCCTGCT CGGCCAGGGCCCGATCGCCGACTCGGCGTGCTACCACTTCACCGGCCACCTGGCGGCACAAACCCGCTACCCGGACGGCTTGCGCGCAATCCTGGAAGAC TACTTCGGTGTGCCGGTGAGCATCGAGGAATACGTCGGCCAGTGGCTGGAGTTGCCGCAGCGCAGCCAGCTGGGCGTCGCGCTGTGCTCGCTCGGCAGCG ACCTGAGCCTGGGCACTCACGTCTGGGATCGCCAGCATAAATTCCGCATCCGCCTGGGACCTTTGAGCCTTGCGCAATACCAACGCCTGCTGCCCGGCCA GGACAGCTTCGGCGAACTGGCCGCCTGGGTCGCCGAGTACCAGGGCGAGGAGCTGGATTGGGAAGTCAATCTGCTGCTACAGCGCGCGCAAGTGCCGCGC ATCGATCTCGACGGCCAGACCCGCCTGGGCTTCGACACCTGGCTCGGCAGCCCGCCGACGGATGCCGACGACCTGCTGCTGGCCCGCGAATACGCCAGCC ACACCACCCCCACAAGGAGCCGCGATCATGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCAGCCGCGTCGCGCTGTTCGGCAAGTTGAACAGCCCGGCCTACAAGGCCATCGAAGCCGCCACCGTGTTCTGCAAGCTGCGCGGCAACCCCTATGTG GAACTGGTGCATTGGCTGCATCAGTTCCTGCAATTGCAGGACTGCGATCTGCACCGCCTGGTCCGCCAGTTCAATCTCGACCCGGCGCGCCTGTCCAGGG ATATCACCGACGCCCTGGACCGCCTGCCGCGCGGCTCGACCTCGATCACCGACCTGTCCGGGCAGGTCGAGGAAGCCGTGGAGCGCGGCTGGGTCTATGG CAGTTTGCTGTTCGGCGAGAGCCAGGTACGCAGCGCCCACCTGATCGTCGGCATGCTCAAGACGCCAAGCCTGCGCCACGCACTCTCGGCCCTCTCCCGC GAGTTCGACAAGATCAAGGTCGAGCACCTGATCGAGCGTTTCGACGAATACCTCGGCGACTCGCCGGAAAACGGCCTGGCCGCCAGCGACGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MSTEPLKPLHSIDRMADEPWAYDFFQALRRIECEASDRPRIGHSLRLHDDPLRLGQKPDCGFAPSTLASIETDAEGAAPRIEQLFFGLTGPNGPLPLHLT EYARDRQRNSGDASFTRFLDVFNHRLLCLFYRAWAEARPTVSHDRPDHDYWSMRLAALSGRGMTSLLGQGPIADSACYHFTGHLAAQTRYPDGLRAILED YFGVPVSIEEYVGQWLELPQRSQLGVALCSLGSDLSLGTHVWDRQHKFRIRLGPLSLAQYQRLLPGQDSFGELAAWVAEYQGEELDWEVNLLLQRAQVPR IDLDGQTRLGFDTWLGSPPTDADDLLLAREYASHTTPTRSRDHE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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