Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS12110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCATCAGCGCCGCCTGGCTGCCCTGGGCATCGAGCACCGAGTAGAAGCCCATACCCTGCCAGGCGTGCTTGCCGGAAGCGTCGTAGAACAAGCGGGTCG GCGTCTGCGCCTTGCTGCGTTCGCCGTCGTACACCGGGATCTTCGAGGCGCCGCGGGCCGCGCCCTCGCCGCTGCCCAGGTTGAGCTGGCAGGCCGAGTC GTAGCAGGCATGGCAGGCCACGCATTTCTCGGTGAAGATCGGCTGGATATCGCGAGTGTAGGAGATCGCTGGCGCGGGACCCTGGGCGCTGGCGAACGAA CTTAAAAGCAGCAGCACACTGCCGATGACAACGCGGTAAGACATATCCCTGGTCCAATCCATAAGAAAATCCGGCGATTCTACCGGGCCAGCACGACCAC CAACATGAGCGATATTCATGCAAAACCGCCGCATGCTCTAAAAGCGCACAGGTTTGCTATGATCCTCGCCCTTCGTAATGGCCCTTCCAGGTAGTCTTTC
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| DNA Sequence for Gene |
>JM49_RS12110
ATGTCCGATCGCAGCACGCGCCTCCAAGCCCTTCAGCAAGCCCTCAAAGAGCGCATCCTGATTCTCGACGGCGGCATGGGCACCATGATCCAGAGCTACA AGCTCGAGGAGCAGGACTACCGTGGCAAACGCTTCGCCGACTGGCCGAGCGACGTCAAGGGCAACAACGACCTGCTGGTGCTGACCCGTCCGGACGTGAT CGGCGGCATCGAGAAGGCCTACCTGGATGCCGGTGCCGACATCCTCGAAACCAACACCTTCAACGCCACACAGATTTCCATGGCCGACTACGGCATGGAA GCGCTGGTCTACGAGCTCAACGTCGAAGGCGCGCGCCTGGCACGCAAGGTGGCCGACGCCAAGACCCTGGAGACCCCGGACAAGCCGCGCTTCGTCGCCG GCGTCCTGGGCCCGACCAGCCGCACCTGCTCGCTGTCGCCGGACGTCAACAACCCCGGCTACCGCAACGTCACCTTCGACGAACTGGTGGAGAACTATAC CGAGGCCACCAAGGGTCTGATCGAGGGCGGCGCCGACCTGATCCTGATCGAGACCATCTTCGACACTCTCAACGCCAAGGCGGCGATCTTCGCCGTGCAG GGCGTGTTCGAAGAGCTGGGCCTGGAACTGCCGATCATGATCTCCGGCACCATCACCGACGCCTCGGGCCGCACCCTGTCCGGGCAGACCACCGAAGCCT TCTGGAACTCGGTGGCCCACGCCAAGCCGATCTCCGTCGGCCTGAACTGCGCCCTCGGCGCCAGCGAACTGCGCCCCTACCTGGAAGAGCTGTCGAACAA GGCCAGCACCCACGTCTCCGCGCACCCCAACGCCGGCCTGCCCAACGAATTCGGCGAATACGACGAACTGCCGGCGCAAACCGCCAAGGTCATCGAAGAG TTCGCCCAGAGCGGCTTTTTGAACATCGTCGGCGGCTGCTGCGGCACCACCCCGGGGCACATCGAGGCCATCGCCAAGGCCGTCGCCGGCTATGCGCCGC GGCAGATCCCGGACATCCCCAAGGCCTGCCGCCTGTCGGGCCTGGAGCCGTTCACCATCGATCGCCAGTCGTTGTTCGTCAACGTCGGCGAGCGCACCAA CATCACCGGTTCCGCCAAGTTCGCCCGCCTGATCCGTGAAGAGAACTACACCGAAGCCCTGGAAGTCGCCCTGCAGCAGGTCGAAGCCGGCGCCCAGGTG ATCGACATCAACATGGACGAAGGCATGCTGGACTCGAAGAAGGCCATGGTGACCTTCCTCAACCTGATCGCCGGCGAGCCGGATATCTCGCGCGTGCCGA TCATGATCGACTCCTCCAAGTGGGAAGTGATCGAAGCCGGCCTCAAGTGCATCCAGGGCAAGGGCATCGTCAACTCCATCAGCATGAAGGAAGGCGTCGA GCAGTTCATTCATCACGCCAAACTGTGCAAGCGCTACGGCGCCGCCGTGGTGGTGATGGCCTTCGACGAAGCCGGCCAGGCCGACACCGAGGCGCGCAAG AAGGAAATCTGCAAACGCTCCTACGACATCCTGGTCAACGACGTCGGCTTCCCGCCGGAAGACATCATCTTCGACCCGAACATCTTCGCCGTGGCCACCG GCATCGAGGAACACAACAACTACGCGGTGGACTTCATCAACGCCTGCGCCTACATCCGCGACGAGCTGCCCTACGCGCTGAGTTCCGGCGGTGTGTCCAA CGTGTCGTTCTCCTTCCGCGGCAACAACCCGGTGCGCGAGGCGATCCACTCGGTGTTCCTGCTGTATGCGATCCGCAACGGCCTGACCATGGGTATCGTC AACGCCGGCCAGCTGGAGATCTACGACCAGATCCCGCAGGAGCTGCGCGACGCCGTGGAGGACGTGATCCTCAACCGTACCCCGGAAGGCACCGACGCCC TCCTCGCCATCGCCGACAAGTACAAGGGCGACGGCAGCGTCAAGGAAGCCGAGACCGAAGAGTGGCGCAACTGGGACGTCAACAAGCGCCTGGAACACGC CCTGGTCAAGGGCATCACCACCCATATCGTCGAAGACACCGAAGAGTCGCGGCTGTCCTTCGCCCGCCCGATCGAAGTCATCGAAGGCCCGCTGATGGCC GGCATGAACATCGTCGGCGACCTGTTCGGCGCCGGCAAAATGTTCCTGCCCCAGGTGGTGAAGTCCGCCCGGGTGATGAAGCAGGCCGTGGCTCACCTGA TCCCCTTTATCGAGCTGGAAAAAGGCGACAAGCCGCAAGCCAAGGGCAAGATCCTCATGGCCACGGTCAAGGGCGACGTGCACGACATCGGCAAGAACAT CGTCGGCGTGGTCCTGGGCTGTAACGGCTACGACATCGTCGACCTCGGCGTGATGGTGCCGGCGGAGAAGATCCTGCAGGTGGCCAAGGAACAGAAGTGC GACATCATCGGCCTGTCCGGCCTGATCACTCCGTCGCTGGACGAGATGGTCCACGTCGCCCGGGAAATGCAGCGCCAGGACTTCCACCTGCCGCTGATGA TCGGCGGCGCCACCACCTCCAAGGCGCACACGGCGGTGAAGATCGAGCCCAAGTACAGCAATGACGCGGTGGTCTACGTCACCGACGCCTCGCGCGCCGT GGGCGTGGCCACCCAGTTGCTGTCCAAGGAGCTCAAGGCCGGTTTCGTCGAGCGCACCCGCGAAGAGTACGTGGAAGTCCGCGAGCGCACCGCCAACCGC AGCGCCCGCACCGAGCGCCTGAGCTACCCGGCGGCCGTGGCCAAGAAGCCGCAGTTCGACTGGAGCAGCTACCAGCCGACCGTGCCGACCTTCACCGGCG CCAAGGTGCTGGACAATATCGACCTGCGGGTCCTGGCCGAATACATCGACTGGACGCCGTTCTTCATCTCCTGGGACCTGGCCGGCAAGTTCCCGCGCAT CCTCGAGGACGAGGTGGTGGGTGAAGCCGCCACCGCGCTGTACAAGGACGCCCGGGAAATGCTCGACAAGCTGCTCGACGAGAAGCTGATCAGCGCCCGC GCGGTGTTCGGCTTCTGGCCGGCCAACCAGGTGCAGGACGACGACCTGGAAGTCTATGGCGACGACGGCCAGCCCTTGGCCAGGCTGCACCACCTGCGCC AGCAGACCATCAAGACCGACGGTAAGCCGAACTTCTCCCTGGCCGACTTCGTCGCGCCCAAGAACAGCGGCGTGACCGACTATGTCGGTGGCTTCATCAC CACCGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCTTATCAGGACAAGGGCGACGACTACAACTCGATCATGGTCAAGGCCCTGGCCGACCGCCTGGCC GAGGCCTGCGCCGAGTGGCTGCACCAGCAGGTGCGCAAAGACTACTGGGGCTACGCCAAGGACGAAGAGCTGGACAACGAGGCGCTGATCAAGGAGCAGT ACAGCGGTATCCGCCCTGCCCCGGGTTACCCGGCCTGCCCGGACCATACCGAGAAGAGCACCCTGTTCGCCCTGCTCGACCCCGAGGCCAGCGAAGGCAA GGCCGGGCGCAGCGGCGTGTTCCTCACCGAACACTTCGCCATGTTCCCGGCGGCGGCAGTCAGCGGCTGGTATTTCGCCCATCCGCAGGCGCAGTACTTC GCCGTGGGCAAGATCGACAAGGACCAGGTCAACAGCTACAGCGCACGCAAAGGCCAAGACCTGGCCGTGACCGAGCGCTGGCTGGCGCCGAACCTGGGCT ACGACAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGCCCAGCGCACTTCACTTGCGGGAGCTGCCAGTCGGCGCTCCCGCAGGCTGGAACAAGCGGTATTGTCTATGCTTTCCCTACACTCACTTGTGTCGAG GGATTTATGGACGACCCCATCAACGACAAGCCGCCGACCCTTTGGCAGATGCTGCAAAGCGTCGCCGCTGCCGCCTTTGGCGTACAGAGCGGCAAGAACC GCAAGCGCGACTTCACCCACGGCAAACCCAGCCATTTCGTGATCCTGGGCATTCTGTTCACCGCGGTGTTCGCCTTGACCCTGTTCGGTATCGTCAAGCT GGTCGTGCACCTGGCGGGGCTTTGAACGCCTGTCAGTGCAGCAACAGATTCAGCGAGAAGGGATAACGGTAGCCGGCCGGCTTGCCCTCGGCCGACAGCC CGCGAAAGTCCACGCCGTATTGCTGCGCCCCCTGCAACTCCAGCAGGCGTTGCGCCTGGACCTTGTCCAATAGCTGGAACATATCCAACTGCCAATCCGG
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| Amino Acid Sequence |
>methionine synthase
MSDRSTRLQALQQALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVLTRPDVIGGIEKAYLDAGADILETNTFNATQISMADYGME ALVYELNVEGARLARKVADAKTLETPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADLILIETIFDTLNAKAAIFAVQ GVFEELGLELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGASELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPAQTAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRQSLFVNVGERTNITGSAKFARLIREENYTEALEVALQQVEAGAQV IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNDVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFINACAYIRDELPYALSSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIV NAGQLEIYDQIPQELRDAVEDVILNRTPEGTDALLAIADKYKGDGSVKEAETEEWRNWDVNKRLEHALVKGITTHIVEDTEESRLSFARPIEVIEGPLMA GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPQAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVERTREEYVEVRERTANR SARTERLSYPAAVAKKPQFDWSSYQPTVPTFTGAKVLDNIDLRVLAEYIDWTPFFISWDLAGKFPRILEDEVVGEAATALYKDAREMLDKLLDEKLISAR AVFGFWPANQVQDDDLEVYGDDGQPLARLHHLRQQTIKTDGKPNFSLADFVAPKNSGVTDYVGGFITTAGIGAEEVAKAYQDKGDDYNSIMVKALADRLA EACAEWLHQQVRKDYWGYAKDEELDNEALIKEQYSGIRPAPGYPACPDHTEKSTLFALLDPEASEGKAGRSGVFLTEHFAMFPAAAVSGWYFAHPQAQYF AVGKIDKDQVNSYSARKGQDLAVTERWLAPNLGYDN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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