Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS10340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGACTACTACCTGTTCGACGACCTGGTCCAGGGCGGCGGCCAGCAGTCACTGGACAGCGCCACCCAATACCTGGACCGCCTGGAAATCGCGCACAAGG TCAGCATCAAGGACGGTGCCTTCACCACCACCGACCTCTCCACCGGCCAGCGCAAGCGCCTGGCCCTGGTCAACGCCTGGCTCGAAGGGCGCCCGGTGCT GGTGTTCGACGAATGGGCGGCGGACCAGGACCCGGCCTTCCGGCGGATCTTCTACACCGAGCTGCTGCCGGACCTCAAGCGCCTGGGCAAGACCATCATC GTCATCAGCCACGACGATCGCTATTTCGATATCGCCGACCAGTTGGTCCGTCTGCGCGCGGGCAAGGTGGTGCACGAAATGCAACCGGCCTGAATCTTTT TTCCGGTTTGTTCATGGAGGAACGTCTCACTATCGGTAATGAGAATTAACCGCAATAAATACCAGCACCTGCCAACCTATACATAGAAGAGAACGCATCC
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| DNA Sequence for Gene |
>JM49_RS10340
ATGCCAGCAGTACTCGGTCTCAGTCCCCTGAGTAAAGCGCTATCCATGCGAAAGGCCCTGAACATCAAGCTTCTCCCCAGCGCACTGGCCCTTGCGGTGT CGCTGCCGGTAGCCGGCTATGTACAGGCCCAAGAGATCGAGCTGGACATTCCCGTGCAATCGCTGGGCAGTGCCCTGCAGGAGTTCGGGCGGCAGACCAA CCTGCAGGTGCTCTATAGCCCGCAGGACGTGCAAGGCAAGCAGAGCACCGCGGTGAAGGGCAAGATGGACACGCAACGGGCCATCGGCATCCTGCTGACC GGCAGCGGCATTCGCTACAGCCTGCAGGGCAACTCGCTGACCCTCAGCGCCACCAGTGCCGGCGCCGAGGGCCTCGAGCTGAGCCCGACGCAAGTAACCG CCAACCAGTTGGGCAACGTGACCGAAGGCACCGGCTCCTACACCCCGGGCACCATCGCCACCGCCACCCGCCTGCCGCTGACCCTGCGCGAGACCCCGCA GTCGATCAGCGTGGTCACCCGCCAGCACATGGATGACTTTGCCCTCAACAGCGTCGACGCCGTCATGCGTCATACCCCGGGCATCACCGTGTCGGCGTTC GACACCGACCGGACCAACTACTATTCCCGCGGTTTCTCGATCAACAACTTCCAGTACGACGGCATTCCCTCCGCCGTGCGCAACGTCGCCTATTCGGCGG GCAACACCCTGAGCGACATGGCGATCTACGACCGCATCGAAGTGCTCAAGGGCGCATCCGGCCTGCTCAGCGGCGCCGGTTCCCTGGGCGGCACCATCAA CCTGGTGCGCAAGAAGCCCACCGCCGACTTCCAGGGCCACGCCACCCTGGGCGCGGGCTCCTGGGACAACTACCGCAGCGAACTGGATGTCAGCGGCCCG TTGACCGAAACCGGCAATGTCCGCGGCCGGGCCGTGGCCGCCTACCAGGACAAGAACTCGTTCATCGACCGCTACTCGACTAAAAACTCGGTGTTCTACG GCATCCTCGAATTCGACCTGTCGCCCGACACCCTGCTGACCGTGGGCGCCGACTATCAGGACAACGACCCCAAGGGTTCCACCTGGTCCGGCAGCTTCCC GCTGATCAACTCCAAGGGCGAGCGCAACAGCGCCAAGCGCTCGTTCAGCAACGCCACCGACTGGAGCAGCTGGCAGCAGTACACCCGCACGGTCTTCGCC ACCCTGGAACACGACCTGGGCGACGGCTGGCTGACCAAGCTGCAACTGGACCACAAGTACAACGGCTACGACGCCCAGATGGGCTCCATCCAGTTCGACC AGCCGCTGCCCGACGGCAGCGCCGAAATCAACGCCCAGCGCTACAAGGGCGACACCACCAGCGACTCGGCCGACCTCTACGTCAGCGGCCCGTTCAGCCT GCTGGGTCGCGACCATGACCTGGTGCTCGGCGGTTCGATCAGCAAGGCCCACTGGAAAGGCAAGGGTTACTGGGACGAAACCTTCTCGGTCCCCAACCGT GTGGACTACAACAACTGGCACGGCAACCTGCCCAAGCCCGACTGGGGCCCGGTGTCGCAGCGCACCGACGACGTGATCCGCCAGACCGGCGTCTACATGA CCACCCGCCTGAACGTGACCGACGACCTGAAAGTCCTGCTGGGCGGGCGTGTGGTCAACTACAGCCTGACCGGCCTGACCCCGACCTACACCGAATCCGG GCGCTTCATTCCCTACGCCGGGGCAATCTACGACCTGAACGAGAACTTCTCGGTCTATGCCAGCTACACCGACGTGTTCATGCCCCAGGAGAACTACAAC CGCGACCGCGACAACAAGTTGATCGATCCGGATGAAGGCGAGAACTACGAAATCGGCATCAAGAGCGAATTCTTCGACGGTCGCCTGAACGCCAGCCTGG CCTACTTCGAAGTCAAGGAAACCAACCGTTCGGTACCGGACGACGCCTACAACAACCAGACCCCGACGCCGCCCAACTACGCGTACAAGGGCAGCAAGGC GACCACCAAGGGCTACGAACTGGAAGTGTCCGGCGAACTGGCTCCGGGCTGGCAGGTGCAGGGCGGCTACACCCACAAGGTGGTGCGCGACGACAACGAT GTGAAGCTCTCGACCTTCGAGCCCGAAGATCAGTTCAGCCTCTACACCACCTACAAGCTCACCGGCGACCTGGACAAGATGACCGTCGGCGGCGGTGCCC GCTGGCAGAACAAGGCCTGGCAGCAAATCTGGAACAGCCCCAAGGGCGTGAATGAAGACATCACCCAGGAATCCTACTGGGTGGTGGACCTGATGACCCG CTACCAGATCACCAAGAACCTGTCGGCGACGCTCAACGTCAACAACATCTTCGACAAGTACTACTACACCAACGTCGGCTTCTATAACTCGGCCATCTAC GGCGAGCCACGCAACGTCATGGTCACCACCCGCTGGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCCCCGCGCCCCCCACGCCCTGGAAAGGTTCCACCTTCCCAGGGCGTTTTTGTTTGCCCCGGATTCCCTGCCCCCCTGTAGCCGCTGCCGAGCCCTG GCGAGGCTGCGATCGGGGCGCAGCCCCGTAAACCTGACGACGCGGTATGCCTGACCCGCACTGTCGCCTGGCCTGGCGACCGCTACGCAGTCGATCGCAG CCTCGCCGGCGCTCGACAGCGGCTACACCCGCCCCCGTAGCCGCTGCCGAGCCCTGGCGAGGCTGCGATCGGGGCGCAGCCCCGTAAAACGTGACGACGC GGTATACCTGACCCACACTGTCGCCTGGCCTGGCGACTGCTACGCAGTCGATCGCAGCCTCGCTGGCGCTCGACAGCGGCTACACCCGTCCCCCGTAGCC GCTGCCGAGCCCTGGCGAGGCTGCGATCGGGGCGCAGCCCCGTAAAACCTGGCGACGCGATATACCTGACCCGCACTGTCGCTTGGCCTGGCGACCGCTA
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| Amino Acid Sequence |
>ligand-gated channel
MPAVLGLSPLSKALSMRKALNIKLLPSALALAVSLPVAGYVQAQEIELDIPVQSLGSALQEFGRQTNLQVLYSPQDVQGKQSTAVKGKMDTQRAIGILLT GSGIRYSLQGNSLTLSATSAGAEGLELSPTQVTANQLGNVTEGTGSYTPGTIATATRLPLTLRETPQSISVVTRQHMDDFALNSVDAVMRHTPGITVSAF DTDRTNYYSRGFSINNFQYDGIPSAVRNVAYSAGNTLSDMAIYDRIEVLKGASGLLSGAGSLGGTINLVRKKPTADFQGHATLGAGSWDNYRSELDVSGP LTETGNVRGRAVAAYQDKNSFIDRYSTKNSVFYGILEFDLSPDTLLTVGADYQDNDPKGSTWSGSFPLINSKGERNSAKRSFSNATDWSSWQQYTRTVFA TLEHDLGDGWLTKLQLDHKYNGYDAQMGSIQFDQPLPDGSAEINAQRYKGDTTSDSADLYVSGPFSLLGRDHDLVLGGSISKAHWKGKGYWDETFSVPNR VDYNNWHGNLPKPDWGPVSQRTDDVIRQTGVYMTTRLNVTDDLKVLLGGRVVNYSLTGLTPTYTESGRFIPYAGAIYDLNENFSVYASYTDVFMPQENYN RDRDNKLIDPDEGENYEIGIKSEFFDGRLNASLAYFEVKETNRSVPDDAYNNQTPTPPNYAYKGSKATTKGYELEVSGELAPGWQVQGGYTHKVVRDDND VKLSTFEPEDQFSLYTTYKLTGDLDKMTVGGGARWQNKAWQQIWNSPKGVNEDITQESYWVVDLMTRYQITKNLSATLNVNNIFDKYYYTNVGFYNSAIY GEPRNVMVTTRWDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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