Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS09130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGGCGATCGCGCGGATGGTCCTGGCCGAACCCAAGGTGGTGATCCTCGACGAAGCCACCTCCGCCCTGGACGCCGCCACCGAGTACAACCTGCACCA GGCGCTGACGCGTTTCCTGCATGGCCGGACCACCCTGATCATTGCCCACCGCCTGTCCGCGGTAAAACAGGCGGATCGGGTTCTGGTGTTCGATGGCGGA CAGATTGCCGAAGATGGCGACCATCAGCAGCTAATTGCCGACGGCGGCCTTTACGCCAAGCTTTACGGGCATTTGCAGCAAGTCCAACGACCTTGAGTTT TATCCGGTTTTCTGTGCTTAGTGCTTGAATTCTCTGGTGGAAATGACCCTCCTGGGGCACGGCCCTGTCGTGTCTCGACTGGCAGCGTGCTCGAACGTCA CGGCCTGTGCGTTCGAAGCCGCGGAAATTAGCCTAGTCTGTGCTGTCAGGAGCGTTATTTTCTCGGGTGTTCATCTGGCAGTGCTTATGCAAGGGACCTC
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| DNA Sequence for Gene |
>JM49_RS09130
ATGAAGCAAAAGCGGACTCTCGGAACGCCACGGTTATTGGGCATCGTCTGGCCATTTATTGCGGTGGTGTTGTTTCAAGCGCTGTTGGGTGGCCTCAGCT TATATGTCCTTTCGGCGGTACGTGGTTACGTTGCCGGGGAGAGCCTTTGGTCCAAGGGCCAGAAGGACGCCATCTACTACCTCAATCTCTACGCCGACAG CCGCGACGAATCGATCTTCCTGAAGTACCAGAACGCCATTGCCGTGCCTCAGGGCGGGCATGAGCTGCGTGTTGCCCTGGATCAGCAGCCGCCCGACCTG AATGCCGCGCGGGCGGGGATTCTCAAGGGCGGCAACCACCCCGACGACAGCGACAGCGTGATCTGGCTGTACCTGAACTTCCGCCATTTCAGCTACCTGG AAAAAGCCATCGACCTGTGGACCGTGGGCGACAGTTATCTAGTGCAGCTCGATAGCGTGGCCCATGAAATGCACCGCAGCATTACCAGCAACCAGGCCTC CGAAGCCGATATCCAGCGCTGGAAGAACCAGATTTTCGCCATCAACGATGGCGTGACACCCGCGGCCAAGGCCTTTAGCGATGCACTGGGCGAGGGCTCG CGGGTCATCCTGCGGCTGTTGCTGATCACCAACCTGGCCACCGCGCTGGGGCTGATTGTCCTGGCATTGCTGCGCACCCATAAGCTGCTGGCCCAGCGTC ATGAATTCGCCAGCGCCTTGCAGTTGGAAAAGGAGCGGGCGCAGATCACCCTGCAATCCATTGGCGACGGCGTCATCACCACCGACGTGGACGGCGCCAT CGCCTACATGAACCCGGCCGCCGAGGAAATGACCCACTGGAAGGCCGAGCAGGCCGTGGGGCTGCCGCTGGCGGCCTTGTTCAATCTACTCGATGAAAAT GCCCAGACCGACGGCTTCACCCTGATCGAACACATCCTCAGCGGCCAGCTCAGTGGCGGCAGCGAGCACTCGAAGCTGATCCAGCGCCTGGATGGCAGCA CGGTGTCGGTGACCCTGGTCGGCGCGCCTATCCAGAACGCCGGCAAGGTCAGCGGCACAGTGCTGGTGCTGCACGACATGACCCAGGAACGCCAGTACAT CGCCAATCTGTCCTGGCAGGCGACCCACGATGCCTTGACCGGCCTGGCGAACCGTCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTGCACAACCTGAGC CGGCAGTCGGGGCGGCATGCGCTGATGTTCCTCGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGCGGCCATGCGGCAGGGGACGAGCTGCTCCGGC ATATCTGCGCCTTGCTCCAGTCGGGCCTGCGCGAGGGCGATACCCTGGCGCGCCTGGGTGGCGACGAATTCGGCATCCTGCTGGAGAACTGCTCGCCGGA AGCGGCGGAAAAGATCGCCGAAGGCCTGCGCCAGACGGTGCAGAACCTGCATTTTGTCTGGAAGGGCCGGCCCTTCGTGACCACGGTCAGCATCGGCCTG GTGCACGTGGCGCACACCCCGACCACCCTCGAAGCATCACTGCGGGCAGCGGACATGGCGTGCTACATGGCCAAGGAGAAAGGGCGCAACCGGGTCCAGG TCTATCACGCGGACGACTCGGAGCTGTCCCTGCGGTTCGGTGAAATGGCCTGGGTGCAGCGCCTGCACATGGCCCTGGAGGAAAACCGCTTCTGTCTTTA TGCCCAGGAAATTGCCGCCCTGGGTCATGTGGACCGGCTCGGCGGGCATATCGAGATTCTGCTGCGCCTGCACGACGAGGCCGGGCGGATGATCCTGCCC GACAGCTTCATTCCGGCCGCCGAGCGTTACGGCCTGATGACCTCTCTGGACCGTTGGGTAGTGGAGAATGTGTTCAAGATCATCGCCGAATGCATCCGCG AGGAGCGCGAAGGGCCGCTGGCGATGTGTGCGATTAATCTGTCGGGCGCGACCATCGGTGACGAGCCTTTCCTGGACTTCCTGCGCGAGCAGTTCATCGT CCATGGCGTGCCGCCGGACCTGATTTGTTTTGAAATCACCGAGACCAGCGCTATCTCCAATCTCGGTAGTGCGATTCGATTTATCAACGAGCTCAAGGGC TTGGGCTGCCATTTTTCGTTGGACGACTTTTGCGCGGGAATGTCGTCATTCGCTTATCTCAAACATTTGCCTGTAGACTTCCTGAAGATCGATGGAAGTT TCGTAAAGGATATGCTGGACGACCCGATCAATCGCGCGATGGTCGAGGTGATCAACCATATCGGTCATGTGATGGGCAAACGCACGATTGCCGAGTTTGT CGAAACACCGCAGATTGAGCAGGCATTGTTGGAGATCGGCGTGGATTACGCTCAGGGCTACCTGATCGAGCGCCCGCAACTCTTTACCTGCGACAGCCTG CAGTGCCGGCCTTCACGACCACAGCCTCTGCTATTCAAGGCTCCTGGCACGTTCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCTCTCGCTGATCCGTACCATCACCATCAAAAGGAGCCCCGACAGTGATCGACGCATTCAACAGGACCGGTCCGCTCATGGACGCTGCAAGCTATCCGG CCTGGGCCCAGCAACTGATCCAGGATTGCAGCGAGAGCAAGCGCCGCGTGGTCGACCATGAACTGTACCAGCGCATGCGTGACAACAAGCTCAGCAACAA GACCATGCGCCAGTACCTGATCGGTGGCTGGCCGGTTGTCGAGCAGTTCGCCCTGTACATGGCGCAGAACCTGACCAAGACCCGTTTTGCCCGTCACCCC GGTGAGGACATGGCGCGGCGCTGGCTGATGCGCAATATCCGGGTAGAGCTCAATCATGCCGATTACTGGGTGAACTGGAGCCGCGCCCATGGCGTGAGCC TGGAAGATCTGCAGGCGCAGCAGGTCCCTCCGGAGTTGAATGCCTTGAGTCATTGGTGCTGGCACACCAGCTCCGCCGACTCGCTGATCGTGGCGATCGC
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| Amino Acid Sequence |
>membrane protein
MKQKRTLGTPRLLGIVWPFIAVVLFQALLGGLSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDESIFLKYQNAIAVPQGGHELRVALDQQPPDL NAARAGILKGGNHPDDSDSVIWLYLNFRHFSYLEKAIDLWTVGDSYLVQLDSVAHEMHRSITSNQASEADIQRWKNQIFAINDGVTPAAKAFSDALGEGS RVILRLLLITNLATALGLIVLALLRTHKLLAQRHEFASALQLEKERAQITLQSIGDGVITTDVDGAIAYMNPAAEEMTHWKAEQAVGLPLAALFNLLDEN AQTDGFTLIEHILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIQNAGKVSGTVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHNLS RQSGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLARLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGL VHVAHTPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEIAALGHVDRLGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKIIAECIREEREGPLAMCAINLSGATIGDEPFLDFLREQFIVHGVPPDLICFEITETSAISNLGSAIRFINELKG LGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPQLFTCDSL QCRPSRPQPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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