Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS08375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCCTGCTGCGGCCTGCGTGAGGTTTACTCGCTTCATACACAATTTACGCACAACCTTATCCACAGGCTGTACGTTGCAATCACCCCCAAAAACGCATT ATCTTGTAGCTCGGCCGCAAAAAAACCCTACATCTAGGGTTTAAGGCCAAAAACCAAACACAAATCAGACAAGAAACTCAAGCGCTTTTCTTGCACTTCT TTGGTTGAACCAATCGGATTTTCAGAAGCCAAACCGCGCGTGCGGATGGCTGCGGTTTTCCAGCCCACGGCGAGGAAAACGGTACGGGTGTTGCAGTACA TGACTGTCACCCACCAGGAATACGGTCACGAGCCCCAGGCTCGCGACCTATGACTTCGGCATGGAAGCGGCGCCAACAGCCCCCCTTCCTGAACTGTCCC GAAGTCGTTATGCCCGGCGTGCGCCGGTTGTAGTGCTTCAGGACGGAACGGTGGGCACCCAAAGGGTGCCCAAACAAACATAGAGAACGTGGAGACACCC
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| DNA Sequence for Gene |
>JM49_RS08375
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGCCAAAGCGCCGCAGGCTGCCGATTCCAACCTGGATCTGTCTGCCACCGCGCCTGGCCAACTGCGAG TGATCAAGCGTAACGGCACTGTCGTTCCTTACACCGATGACAAAATCACCGTCGCCATCACCAAAGCGTTTCTCGCAGTTGAAGGCGGCACCGCTGCCGC TTCGTCGCGAATCCATGACACCGTCGCTCGCCTGACCGAGCAGGTCACCGCCACCTTCAAGCGTCGCATGCCTTCGGGCGGCACCATCCACATCGAAGAG ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTTGCCCGCGACTATGTGATCTACCGTGACTCGCGCGCCAAGGAGCGCGCCA CCCGCACGCCAAGCGAAGAGCCGGTACAGGCTCACCCGTCGATCCGCATCACCCGCGCCGACGGCAGCTTCGCGCCTCTGGACATGGGCCGCCTGAACAC CATCGTCACCGAAGCCTGCGAAGGCCTGGAAGAAGTCGACGGCGACCTGATCCAGCGCGAAACCCTGAAGAACCTCTACGACGGCGTAGCGCTCAAGGAC GTCAACACCGCCCTGGTGATGACCGCGCGTACCCTGGTAGAGCGCGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGCGCCG AAGGCCTGAGCTTCCTGGAAGTGGCCGAGAGCGCCACCCACCACGAGATGGCCGACCTGTACGCCAAGGCACTGCCGGCCTACGTCGCCAAAGGTATCGA GTTCGAACTGCTGAACCCTGTGCTGGCCGACTTCGACCTGGAAAAACTCGGCAAGGCGATCAACCACGAGCGCGACCAGCAGTTCACCTACCTGGGCCTG CAGACCCTGTACGACCGCTACTTCATCCACAAGGACGGCGTGCGTTTCGAACTGCCACAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGCAGAGAGAAGACCGTGCCATCGAGTTCTACAACCTGCTGTCGTCCTTCGACTACATGGCTTCGACTCCGACCCTGTTCAACGCCGGCACCCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGCATCTACGGCGCTATCCACGACAACGCCATGCTGTCGAAATTCGCCGGT GGCCTGGGCAACGACTGGACTCCGGTGCGTGCGCTGGGCTCCTACATCAAGGGCACCAACGGTAAATCCCAGGGCGTCGTGCCGTTCCTGAAAGTGGTCA ACGACACCGCCGTAGCCGTGAACCAGGGTGGCAAGCGCAAAGGCGCTGTATGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAGCT GCGCAAGAACACCGGTGACGATCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGCGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCATCGGAAGTACCGGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGTGCGAATACG GCAAGATCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAGATGCTGTCCATGCTGTTCGAAACCGGCCACCCTTGGCTGACCTTCAAGGA CCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATCGCC GTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGCAACGCACCGTGAACACCGCCGTGCGCATGC TCGATAACGTGATCGACATCAACTACTACTCGGTACCGCAGGCGAAGAACTCCAACTTCAAGCACCGTCCGGTCGGACTGGGCATCATGGGCTTCCAGGA CGCGCTGTACCTGCAGCACATCCCTTACGGTTCCGATGCTGCCGTCGACTTCGCCGACAAGTCCATGGAAGCGGTGAGCTTCTACGCGATCCAGGCTTCC TGCGACCTGGCCGACGAGCGTGGCGCCTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCGAAG CCCGTGGCCAGAAGTACATCGATGTCGACCTGAACGAAACCCTGGACTGGGCACCAGTGCGCGCCCGTGTACAGAAAGGCATTCGTAACTCCAACATCAT GGCCATCGCTCCGACCGCGACCATCGCCAACATCACCGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTGTATGTGAAATCGAACCTGTCGGGC GAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTCAAGGCTCGTGGCTTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTTCCG TGCAGCAGATCGAGCGCATCCCGCAAGAACTCAAGGAGCTCTACGCGACTGCCTTCGAAGTGGAAACCAAGTGGATCGTCGACGCCGCCAGCCGTCGCCA GAAGTGGATCGACCAGGCTCAGTCGCTGAACCTCTACATCGCCGGCGCTTCGGGCAAGAAGCTCGACGTGACCTACCGCATGGCCTGGTACCGTGGTCTG AAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTGAACGCTGTTTCCAGCGGCGGCAACCACG GTGACGACTCGGTCCTGGCCGCTCCAGCCGGTCCTGCTCCAGTGCCGAAGGCTTGCGCCATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGAGCCGATAGGCGCCTCCCCGGCGCTTATCCGAACCCCCGACAGGCCCTGCCTGCCGGGGGTTTTCTTTTGCCCGGGAAAGCCACAGCACCACCGAA TCCAAAGGACGGCACTTCGAGGACCAAGCCCTCCCACAACCTGTTGCAGACGACTTGCCAGAAGCCCCCAACGTCAGCTTCGCGGGAATGAACCAGCCGA ATACAGCCCTGTGAGCCAGGCAGCCGTGACAGGACCGATCCACCTCCTCTGCCATATCCCTCATCGCGAGCAAGCTTCGCTCCTACAAAAGCGGGTCGTG GTCGATGAAGCTTGCGGGCACAAAAAAGCCCCTGCGATGAGGGGCTTTTTTTCAAGCGCTGTCAGCCAGCCATTATCAGGTCATCTGAATAATGGTCTGC ATGATGGTGCTCTGGGTGGAGATGGTCTTGGCGTTCGCCTGGTAGTTGCTCTGGGCCTTGATCAGGTCCACCAGCTCGTTGGTCAGGTTGACGTTCGACT
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQAKAPQAADSNLDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERATRTPSEEPVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLEEVDGDLIQRETLKNLYDGVALKD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLSFLEVAESATHHEMADLYAKALPAYVAKGIEFELLNPVLADFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVDFADKSMEAVSFYAIQAS CDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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