Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS06770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AAAAACTGCAGCATTACCTGCAGAAGGTCGAGCAGAACCGGGCGAAGATCGAAGCCGCCTGATCGCCCCTCCTATTAAAGAAGCCCCCGCGCCACACAGC CCGGGGGCTTTTTTTGACCGCAGCTTCTGTAGCAACGAGGCTTGCCCGCGATGAAGGATAACGCGGTCCAACAGGTACACCGCAGCGCCCGGATCGCGGG CAAGCCTCGCGTCTACAGGGGAATGAGCCCGGCCCTGCTGGGCATTCGGTTTTCCGAACGCGACTTTCGGGTCGATTCGGATAACCGGATAAAGACCGCC GACAATATCCGCCATAAATATTTAATAGCCTTTCAAATCAAGGCCTTAATACGGATCAGCTGGCCTGGCACGACTCATGCTCTACACTCTCCGACGAATG CCTGATGCGCCAACACACATCAGGAGCCGTCAAGGCATTCGCTGTATAAGAGAGCCGTCGAACTGGCTTCATAAAAAAAACAAATGTCGAGGAAATATTG
|
|
| DNA Sequence for Gene |
>JM49_RS06770
ATGCGCATCGTTCCCCATCTGTTGGGCGCAGCCATTGCTGCTGCTCTGATTAGCACTCCAGTGGTCGCCGCCGAACTCACCGGCACACTGAAGAAAATCA AAGACTCCGGCACCATCACCCTCGGACATCGCGACGCTTCCATTCCGTTCTCCTACATCGCGGATGCATCCGGCGTTCCAGTCGGCTACTCCCACGACAT CCAGCTGAAAATCGTCGAAGCCCTGAAAAAAGACCTCGACATGCCGGATCTCAAGGTCAAATACAACCTGGTTACCTCGCAGACCCGTATCCCGCTGGTG CAGAACGGCACCGTGGACATCGAGTGCGGTTCCACCACCAATAACGTCGAGCGTCAGCAGCAGGTCGACTTCTCCGTCGGTATCTTCGAGATCGGCACCC GTCTGCTGTCCAAGAAGGATTCGCCTTACAAGGACTTCCCGGACCTCAAAGGCAAGAACGTCGTAACCACCGCCGGCACCACGTCCGAGCGCATCCTCAA GGCGATGAACGCCGACAAGCAGATGGGCATGAACGTGATCTCGGCCAAGGACCACGGCGAGTCCTTCAACATGCTCGAAGGCGGCCGCGCCGTGGCCTTC ATGATGGACGACGCGCTGCTGGCCGGTGAAATGGCCAAGGCCCGCAAACCGAGCGAGTGGGCCGTGACCGGCACCGCGCAATCCTACGAAATCTACGGCT GCATGGTCCGCAAGGGCGACGCACCGTTCAAGAAAGCCGTGGACGACGCCATCGTCGCCACCTTCAAGTCGGGCGAGATCAACAAGATCTACGACAGATG GTTCCAGTCGCCGATTCCTCCAAAAGGCCTGAACCTGATGTTCCCGATGAGCGACGAGCTCAAGGCCCTGATCGCCAACCCGACCGACAAAGCGGCTGAC GATAAAAAGTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTCCTGACTAACCTTGTCTCCTGAAAGGGCGCGGCCCTTTCAGGAGCCTGTCACTACCTGCTGGCTTTTTTTGGAAACACTCGAACCGGTGGTTGTCGAG CCGATCGCGTGTGCCTGGGCGTCATCCAGGCGGGAACGGATTTCCCCAAGCGGGTGCTTGTACATCGATCGATCAGAGGGGAGACCCTAATGAATTACAA CTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGCGTGGGCAGCGAGACCTATCTCGACTGGTACATCGCGGGCCTGGGCTGGACCATCGCCATCGCCGTG GTGGCCTGGATCGTCGCGCTGCTGCTGGGCTCGATCCTGGGCGTCATGCGGACCGTGCCGAATCGCCTGGTGTCGGGCATCGCCACCGTCTACGTGGAGA TCTTCCGTAACGTACCGCTGCTGGTTCAGCTGTTCATCTGGTACTTCCTGGTACCGGACCTGCTGCCGCCAGACCTGCAGGAGTGGTACAAGCAGGACCT
|
|
| Amino Acid Sequence |
>ABC transporter
MRIVPHLLGAAIAAALISTPVVAAELTGTLKKIKDSGTITLGHRDASIPFSYIADASGVPVGYSHDIQLKIVEALKKDLDMPDLKVKYNLVTSQTRIPLV QNGTVDIECGSTTNNVERQQQVDFSVGIFEIGTRLLSKKDSPYKDFPDLKGKNVVTTAGTTSERILKAMNADKQMGMNVISAKDHGESFNMLEGGRAVAF MMDDALLAGEMAKARKPSEWAVTGTAQSYEIYGCMVRKGDAPFKKAVDDAIVATFKSGEINKIYDRWFQSPIPPKGLNLMFPMSDELKALIANPTDKAAD DKKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|