Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS00980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTGGGCTGAATAGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCGCTTGTAGCGCATCGGAAAGCTTGGTTAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAGCCGAAAGTAGCAT GGGAAAACGACAAGCCTACCGTCGTCGCCCTGCGTGAAATCGCTGAAGGCCTGATCGACTACGCAGCTATCGCCGAAGCCGAAATCGTTGAAGATGAACC GCTTTTTGCTGCTTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCCTACGGCAGGAGTCATC
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| DNA Sequence for Gene |
>JM49_RS00980
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTATCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAGCGCCGTCGCAGCGGCGAGGCGTACGTCACGCACCCATTAGCGGTCGCAAACATTCTCGCCGACATGCATATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAAGAAGCGCTGCAAGCGCAGTTCGGTGAAACCGTAGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAAGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGTGAAAAACGCCGACGGATCGCCAAGGAAACCCTGGAGATCTACGC GCCCATCGCCAACCGCCTGGGCATGCACAGCATCCGCATCGAATTCGAAGACCTCGGGTTCAAGGCCATGCATCCGATGCGTTCCGCGCGGATCTACCAG GCAGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTGAGCCACTGCCTGGCCATCGACGGCATCCAGGGCGAAGTCA GCGGCCGCCAGAAGCACTTGTACGGCATCTATAAAAAGATGCGCGGCAAACGCCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCAGGTCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGCGTTCCGATCGAGATCCAGATCCGTACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCACTGGCTGTACAAATCCAGCGGCGACGAGCAGCCAAAGGGCACCCATGCCCGGGCTCGTCAGTGGGTCAAGGGCGTGCTGGAGATGCA GCAACGCGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCGAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACCGCAGTGGACTTCGCCTACGCGGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGTCGTATCAATCGCCGCCTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACCGTGGAAATCGTCAGCGCCCCGGGCGCACGCCCCAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC TCGCACCCACATCCGCCATGCGCTGAAACTGCAACGCCGCTCCGAATCCATCAGCCTGGGCGAGCGCCTGCTGAACAAGGTGCTCAACGGTTTCGACAGC GCGCTGGAAAAGATCCCCGCCGAACGCGTGCAAGCGATGCTCACCGAGTATCGCCTGGAGCTGATCGAAGACCTGCTGGAAGACATCGGCCTGGGTAACC GCATGGCTTATGTGGTCGCCCGTCGCCTGCTCGGCGAAGGCGAACAGCTGCCAAGCCCGGAAGGTCCGCTGGCCATTCGCGGTACCGAAGGCCTGGTCCT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCGGGCAAGGGGATGGTGGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTTTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAACTGGAAC ACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGGGATGGTCGCATCAGCGT GGTCCAACTGGTCGTCAGTGTGCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATTCGCATCACTCGCATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCTATACAGCCCGCCCATTACAAGGAGTCATTCATGACCAAGACCGTTATCACCAGCGACAAGGCACCCGCCGCGATCGGCACCTATTCCCAGGCGA TCAAGGCAGGCAACACCGTCTACATGTCCGGCCAGATCCCGCTCGACCCAAAGACCATGGAACTGGTGGAAGGCTTCGAAGCCCAGACCGTCCAGGTATT CGAGAACCTCAAGTCCGTGGCCGAGGCCGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTCAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTC AACGAGATCATGGGCAAGTACTTCCAGCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAAGGCGCGCAGGTTGAAATGGATGCCA TCCTGGTCATCGAGTAACACGTCCGGCGCGGCTACCCAGGCCGCGCCGTCTTCGTTCTGAAAGGATTTCCTCATGCGCAAAGCGCTAGCCCTCTCGTTGT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEKIPAERVQAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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