Pseudomonas chlororaphis subsp. aurantiaca JD37, JM49_RS00825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis subsp. aurantiaca strain JD37, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGAGATTGAACTGCCGTTGAAGCTACTGGCAATCGGTGATTACACCCAGCGCGTGG ACGAGCGCAAAGTGGAAGACCGCAAGCCGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAGGAGCTGAGCCTGACGCTGAGCGTGCC TAACCGTCTTCAGGAAGAGGGCGACACCGAAGAGCTGGCGGTCAAGCTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTG CCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAGGGTCCGCTGGGTAACGCCCCTGCATTCCGTAAAGCCATCGAAGGCGTAC TCGCCGACGACGAATCGCGCGGTCGTGTACTCGGTGAGCTGGGCCTGAACGCCGCAGCCACCGAAGCCTGAGTCTCTATCAGTCAAGGAAGCCAAACACT
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| DNA Sequence for Gene |
>JM49_RS00825
ATGAGCACTAGTGCAGCACAACAGAAAAGCAACGAGAACGGCGAGTACAGCATTCTCGACAGCATCATCGCCGAAACCCGCCTGACTCCGGACGACGAAG CCTACGACATCGCCAAGCGCGGTGTGTCGGCCTTCATCGAAGAGCTGCTCAAGCCTCAGAACGACGGCGAGCCGGTCAAGAAGGCCATGGTTGACCGCAT GATCGCCGAGATCGATGCCAAGCTCAGCCGCCAGATGGACGAAATCCTTCACCACGAAGACTTCCAGTCCCTGGAATCGGCCTGGCGTGGCCTGCAGTTG CTGGTCGACCGCACCAACTTCCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAGCAGGACCTGCTGGACGACTTCGAAGATTCGCCGGAAGTGA TGCAGTCTGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGCCAGCCGGTGGGCGCGATCATCGCCAACTACTTCATGTCGCCAAG CTCGCCAGACGTGAAGCTGATGCAGTACGTGTCCAGCGTTGCCTGCATGTCCCACGCGCCGTTCATCGCCGCGGCCGGTCCGAAGTTCTTCGGCCTGGAA AGCTTCACCGGCCTGCCGGACCTGAAGGATCTGAAAGACCACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGCCAGTCGGAAGACTCGCGCT ACATCGGCCTGACCGTACCGCGCTTCCTGCTGCGCAACCCGTACGATCCGGAAGAGAACCCGGTCAAATCCTTCGTCTACAAGGAAACCGTTGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCGTACGCCTTCGGTACCAAGCTGACCGACAGCTTCGCCAAGTTCCGCTGGTGCCCGAACATCATCGGCCCG CAGAGCGGTGGCGCGGTAGAAGACCTGCCGCTGCACCACTTCGAAAGCATGGGCGAAATCGAAACCAAGATTCCTACAGAGGTCCTGGTTTCCGACCGCC GTGAATACGAACTGGCCGAGGAAGGCTTCATCTCCCTGACCATGCGCAAAGGCAGCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCCGAAGGCAAGGCTGCGGAGCTGAACTACAAGCTCGGCACCCAGTTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC CTGAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAACGTACCGACCTCGAGCTGGAACTCAACAAGTGGATCCGCCAGTACGTCGCCGACCAGG AAAACCCGAGCGCCGAAGTCCGTGGCCGCCGTCCGCTGCGTGCCGCGCAGATCATCGTCAGCGATGTGGAAGGTGAGCCGGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGTGCCGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCAGGAGCTAGGTCATGACCGGATACGGCAGCCTTTTCGAACGCCTGAGTGGCGAGGCCGACAAACGTGTCGGCTGGAGCCGCGAGGTTTCCGCCATGGC GTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAGACGCTGTCCGATTACGGGTTGCCCGATCTCAACGACATGCGCCTG AGCCTGCACGACGCCCTGAGCCAGGCTCGCCTGGCCATCGAAAGCTTCATCGAAGCCTACGAGCCGCGTCTGAGCAATGTGCGTGTCGTTTCCCTGCCGC GCGATCACGATCAGCTCAAGCTGGCTTTCAATATCGAAGGCCTGCTTGAGGTGGACGGGTTCAAGCGCCAGGTCAGTTTTTCCGCGCGCCTGGATGGCAG CGGACAGGTCAAGGTGACATGAAGATGAGCGAAGACCATTTCATTCGTTTGGGCGAGGCGGCAAGTCACGCCGTTGAGCCAGTCAACCATGTTTCATTCG
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| Amino Acid Sequence |
>type VI secretion protein
MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKAMVDRMIAEIDAKLSRQMDEILHHEDFQSLESAWRGLQL LVDRTNFRENIKIEILNVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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