Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AAGCGATCTCCGTGGGAGTGGTGGATGCCGAAACCCAGCACAAGGCGATTTCGCTGCGGGTGTTGACCGTCGACGACTCTTCAGTGGCCCGCAAGCAGGT GACCCGTTGCCTGCAAACGGTCGGTGTCGAGGTGGTGGCGTTGAACGACGGGCGACAGGCGCTCGATTACCTGCGCAAGCTGGTCGACGAGGGCAAGAAG CCTGAGGAAGAGTTCCTGATGATGATCTCCGACATTGAAATGCCGGAGATGGATGGGTACACCCTGACGTCGGAAATCCGCAGCGATCCGCGCATGCAAA AGCTGCACATCATCTTGCATACTTCGTTGTCCGGGGTTTTCAACCAGGCGATGGTCAAGAAGGTCGGCGCCGACGATTTCCTGGCGAAATTCCGTCCAGA TGACCTGGCTTCCCGGGTCGTCGAGCGGATCAAGGCAGCAGAATAAAAGGTCGGGCGCGTTGTGCGCCCGGCAAGTCAACACGATGAAAGAGGCGGTATC
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DNA Sequence for Gene |
>AW28_RS25845
TTGTCTACGGGTAATTTGGATTTCGAACAGTTCCGGGTCTTCCTGGAAAAAGCCTGTGGCATCTTGCTTGGTGAAAACAAGCAATACCTGGTGTCGAGCC GTCTCAATAAATTGATGGAACAGCAGGGCCTCAAGTCATTGGGCGAACTGGTGCAGCGTATCCAGACCCAACCGCGCAGTGGCTTGCGCGAAATGGTGGT GGACGCGATGACCACCAACGAAACCTTGTGGTTTCGTGACACCTATCCGTTTGAGGTGTTGAAGAACAAAGTGCTGCCGGCGGCCATCAAGGCCAGCCCG GGCCAGCGTCTGCGGATCTGGTCGGCGGCCTGTTCGTCGGGGCAGGAACCCTATTCGCTGTCGATGTCCATCGATGAGTTCGAGCGGTCCAACCTCGGCC AGTTGAAAGGCGGCGTGCAGATTGTCGCCACCGACCTGTCCGGGACCATGCTCAATAACTGCAAGACCGGCGAGTACGACAGCCTGGCTATCGGCCGGGG CCTGTCGCCGGATCGCCTGCAACGTTACTTCGATCCGAAAGGGCCGGGTAAATGGGTGGTCAAGGCGCCGATCAAGAGCCGGGTGGAGTTCCGCTCGTTC AACCTGCTGGATAGCTATGCCAGCCTGGGCAAGTTCGACATCGTGTTCTGCCGCAACGTACTGATCTACTTCTCCGCCGAAGTGAAGAAAGACATCCTGC TGCGCATCCACAGCACGCTCAAGCCGGGCGGCTACCTGTTCCTCGGTGCCTCCGAGGCGTTGAACGGTTTGCCGGATCATTACCAGATGGTCCAGTGCAG TCCGGGGATCATCTACCAGGCAAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTGGCTTGAACTGTCAAAAAACGGGAGTCCCCACGGGCTCCCGTTTTTTTATGCCTGCCGGTCACCACTAATCCCGCTCCCACAGTTCGAATGTCATTTG CCCTTGAGAAGCGGCAGAAAAGCGGCAGCCAGCGGAAGCCAGTTGCCGCTTTTCTGGCATTGCCGCTTTGCCGATGCCCGCAAAGCCCCGGTTTATGGGG TTTTCCAAAGTGGCACGCTGCTTGCTAAGTTCATCGCACGTACATTCTGGTCACCCAAAGGTTTCCGACATGAGCATCAGCTTCGATAAAGCGCTCGGTA TCCACGAACAGGCCCTGAGCTTCCGCGCCCAGCGTGCCGAAGTCCTGGCCAACAACATCGCCAACGCCGACACCCCGAACTACAAGGCGCGTGACCTGGA CTTTTCCAAAGTGCTCGCCGAGCAGAACGAGAAGACCAAGAACGGCCACTTCGCCTTGAACATGACCAACAGCCGTCATATCGAAGCCGAAGGCCTGGGC
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Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGLKSLGELVQRIQTQPRSGLREMVVDAMTTNETLWFRDTYPFEVLKNKVLPAAIKASP GQRLRIWSAACSSGQEPYSLSMSIDEFERSNLGQLKGGVQIVATDLSGTMLNNCKTGEYDSLAIGRGLSPDRLQRYFDPKGPGKWVVKAPIKSRVEFRSF NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILLRIHSTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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