Pseudomonas brassicacearum PA1G7, AW28_RS23245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCACGCCGGAAGAGCTGTCCAAGAAGTTTCGCTACAACCAGCGCCGTGAGCTGCGCTTGCTGGAAGAGGCGGGCGGGGTGGTGCGGCCGGTCGACGAGT TTTCCAGTGCCGAGCTGGCTTCGATCTACTGCGACCTGTTCCTGCGTCGCTGGGGCTTTGCGGCCACCGGTGCCGAGCGCATGGGCGAGGTGATCGAGTT GCTGCGCGAATGGCTGATCGGTTCGGTGATCTTCCTCAACGATGCGCCGATTGCCATCCAATTGGTGTATCGCGTCGAAGCGCCCGAGTGGATCAGCGTC GAGTACATCAACGGTGGTGTCGACCCACAGACTCGCGAATTCAGCCCCGGTAGCGTGTTGAGCTTCCTCAACACCCAGAGCGCCTGGGAACATGCCCGTG CCGCCGGCAAACCGTTACGTTTTTCGTTCGGTCGGGCGGACCGGGAGTACAAGGACCGTTGGTGCAACCCCGTGCCGGTGTTTACCGTATGAATCCACCG
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| DNA Sequence for Gene |
>AW28_RS23245
ATCAGTCGCAAGCAACAGTTGCTCAAGCGCCACCGTCGCAACAAGCGCGCGGGGCTGCTGCTCGCCCTCATCGCACTGGTCTTGCTGGGGGTGGCAGTGG CCTGGTGGTTGCCCCTGGTGTTGGCGGTGCTGGGCTGGATCGCCCATGAGGCGTGGTTCGCCGATCATCTGTTCTATTCGCCCAGGGATGATTACCAGTA CAGCTTCCCGCCGTTCACCCAGCAACCCAAGGTGCACCTCAATGCCGGGCGGCTGCGGCTGGACGAAGGCGTGATTCTGGACGATGGCGCGACGTTGATT CTCGCGTTGCGGGTCAAGAGCACCTGGCTGGGGTGCTTCATCGACCCGGTTGTCGAAATGTTGGGCGGTGAAAGGGACCTGCAAACTTTCGAGCGCGGGG TCAACGGCCTGCGCTATCTCAATCTCAGCGAGCAGGGCCCGGCGTTGTCCCGAGGTGAGCTGCGCCTGCGCGGGCGCCATTGCCGTTTGCTGGGCGAGCC GACGCTATGGTCCTTCACGTCGCCGCAAGTGCAGCGCCAGCGGGTGATGGTCATCGCTCCCCATGCCGACGATGCGGAGCTGGCCGCCTACGGCTTGTAC AGCCAGGCTGACGAAGCCTGGATCGTCACGCTGACCGCCGGTGAAATCGAAGCCGAACATTATCGACAGATGGGCTTGGACCGCGTTGAAGCTGCGCGGC TCAAGGGCCGTTTGCGCGCCTGGGACAGCATTGCCGTACCGCGTTGGGCGGGAGTGCCTGAAGCGCACTGTGTGCAGTTGGGTTACTTCTGCCTGCAACT GGCCGCCATGCAAGCGGCGCCGAGCCAACCCCAAGGTTCTCGCGAGGCTGACCTGAGCGATACCCGGCTGTTCCGTCAGTTGAACCCGTTCCTCCTGCCC GGCGATGCCGACGGCGCGCCGACCTGGGACAACCTGTTGGCGGACCTGCGCGAACTGCTGCTCAAGGCGCGCCCGGAGGTCATTGTGTTGCCGCATCCGA CCCTTGATCCGCACCCCGACCATCTCTGCGCCCATCATGCCGTCCTGCAAGCCCTCGAAGGCCTGGAATGGCAGCCGACCACGCTGTTGGGCTACGCCAA TCACTTGCACGACAACGATCGTTGGCCCATGGGCAATACCGGAGAAGGCGTGGCATTGCCGCCGGTCTTCGATCCAGGTCAGTTGATGCAACCCCTGAGC TTGCCTTTGTCATTGGCAGCCCAGCGGGACAAGGCCATGGCCTTGGGAATGATGCATGACCTGCAACCGCCTGCGCCTTTGAAGCGCCGGTTGAGGCGGT GGATACAGTATGTCCTGACCCGTAGAGTGGGGTCTGTTTATGGCGAGAACGATTTTTTCCGCAAAGCGGTCAGGCGTCACGAGCTCCTCTGGCTGCTGAC ACCTGCGAAGCACAGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACATAAATGACGCATAACCACCTCCAGCGTCCTTCGTCCTTGGTGAATGTGAGCTTGCTGTGATCAATCCATGCCCGCGTATTCTTTTTATCATTCCGT ATTTCGGACGCTGGCCGTTCTGGATGCCATTGTTTCTCGAAAGTTGCCGGCGTAATGCTGATATTGATTGGCTGTTGTTCAGTGACTGCGGTGTTCCGGA AAATCTTCCACCGAACGTGACGGTCGAAAGCACCACGTTCGAGGCGTATTGCCAGCTGGTTTCCCGGCGATTGGAGATCGAATTCAGGCCGAAACAGCCC TACAAGCTGTGTGATATCAAGCCTGCCCTCGGGTACATTCATGTCGATCGTCTCGACGGCTATGACTTTTGGGCTTTTGGCGATATCGACTTGGTGTACG GTGATCTTCGGCAGTATTTCACCGCTGAACGCCTGGCCAGCCATGACGTGTTTTCCACCCATGAGCGACGTGTCGCTGGCCATTTGTGCTTGATACGCAA
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| Amino Acid Sequence |
>GlcNAc-PI de-N-acetylase
MSRKQQLLKRHRRNKRAGLLLALIALVLLGVAVAWWLPLVLAVLGWIAHEAWFADHLFYSPRDDYQYSFPPFTQQPKVHLNAGRLRLDEGVILDDGATLI LALRVKSTWLGCFIDPVVEMLGGERDLQTFERGVNGLRYLNLSEQGPALSRGELRLRGRHCRLLGEPTLWSFTSPQVQRQRVMVIAPHADDAELAAYGLY SQADEAWIVTLTAGEIEAEHYRQMGLDRVEAARLKGRLRAWDSIAVPRWAGVPEAHCVQLGYFCLQLAAMQAAPSQPQGSREADLSDTRLFRQLNPFLLP GDADGAPTWDNLLADLRELLLKARPEVIVLPHPTLDPHPDHLCAHHAVLQALEGLEWQPTTLLGYANHLHDNDRWPMGNTGEGVALPPVFDPGQLMQPLS LPLSLAAQRDKAMALGMMHDLQPPAPLKRRLRRWIQYVLTRRVGSVYGENDFFRKAVRRHELLWLLTPAKHR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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