Pseudomonas brassicacearum PA1G7, AW28_RS21025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGTCAGCACCCCCATCAGCGCCGAAGACACCGGTGGCAGCCTGCACGACCGTCTCGCGCTCATTGGCCCGCCGGCCGTGGTCGAGGCGATTGCCG GCCTGGCCGCTGGCACCTTGGAAGGCGAAGTGCAGGATGACAGCCTCGCCACCTACGCGCACAAACTGAACAAGGACGAAGCCCGCATCGACTGGAGCTG CCCAGCCGTTGAGCTGGAGCGCCTGGTGCGGGCCTTCAATCCTTGGCCGATCTGCCACAGCACCTTGAACGGCGAAGCCCTGAAAGTGCTGGCGGCCAGT TACGCCGAAGGGAAGGGCGCACCGGGTGAAATCCTCAGCGCCAGCAAGGATGGCCTGGTCGTGGCCTGCGGCGAGCAGGCGTTGTGCCTGACGCGCTTGC AACTGCCCGGTGGCAAGGCACTGAATTTCAGCGACCTGTTCAACAGCCGCCGTGAGAAATTTGCCGTCGGCACTGTGCTCGGCCAAGCGACGGACGCCTC
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| DNA Sequence for Gene |
>AW28_RS21025
ATGAACCCGCGTCTGGCCGCCGCCAAGGCACTTGCCGCCGTACTCAGTGGCAAAGCCTCCCTCAACAGTTCCCTGCCGACCCAACTGGACAAGGTCGAAG ACCGTGATCGCGGTTTCACCCAGGACCTGGCGTTCGGCACCGCCCGTTGGCAGCCGCGGCTGTCGGCCCTCGCGGCGAAGCTGTTGCAGAAGCCGTTCAA GGCCGCCGATGCCGACGTCGAGGCGCTGCTGCTGGTGGGGCTCTATCAACTGCTCTACACCCGCGTCCCGGCCCACGCCGCCATCGGCGAAACCGTGGGC TGCGCCGACAAGCTGAAAAAGCCCTGGGCCAAGGCCCTGATCAATGCCGTGTTGCGCCGCGCCCAGCGGGAAAGCGAAACCCTGTTGGCCGAGCTGGAGC ACGACCCGGTGGTCCGCACCGCTCACCCGCGCTGGCTGCAAAAATCCCTGAAGGCGTTCTGGCCCGAGCAATGGGAAGCCATCTGTGCGGCCAACAATGC CCATCCACCGATGATCCTGCGGGTCAACCGTCGCCACCATACCCGCGACGCCTACCTGGCGTTGCTGGGTGAGGCGGGCATCCCGGCCATCCCGTGCCAG TACAGCCGCGACGGCATCGTCCTGGAAACCCCGGGCGATGTGCGCGCACTGCCGGGCTTTGCCGAGGGCTGGATCAGCGTCCAGGACGAAGCCGCGCAAC TGGCCGCTGACCTGCTGGAGCTGGCGCCCGGCCAAAGGGTGCTGGACGCTTGCTGCGCGCCGGGTGGCAAGACCTGTCACATCCTCGAGGCCGAGCCGAA GCTGGCCGGCGTGGTGGCGGTGGATCTGGAAGCCAAGCGCCTGGTGCGCGTGAAGGAAAACCTCGAACGCCTCGGCCTGGAGGCCGAGCTGATCGCCGCC GATGGCCGCGACACCGCGACCTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTCCTCGACGCGCCATGCTCGGCCACCGGCGTGATCCGCCGCCATCCGG ACATCAAGCTTACCCGCCAGCCGGACGACATTGCGGCGCTGGCCGTGTTGCAGGGCGAACTGCTCGATGCCCTGTGGCCGACCCTGGAAGTGGGTGGCAT GCTGCTCTACGCCACCTGCTCGACCTTGCCGACCGAGAACACCGAAGTGATCGAAGCCTTCCTCGCCCGCACCCCAGGCGCCCGGGAGCTGGACATTGCC AGCCAGGCCGGCCTGAAGCAGCCTCACGGCCGGCAGTTGCTGGCCCAGGAAGGCGGTCACGACGGGTTCTACTACGCCAAGCTGATCAAGATCGCCGCCG CACGCGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCGATTCGATAGGAGTGACTGGATGAAAATCATCATCCTCGGCGCAGGACAAGTCGGCGGTTCGCTGGCGGAACATCTGGCCAGCGAGGCCAACGACA TCACCGTGGTCGACACCGACGGCGAACGCCTGCGCAACCTCGGCGACCGTCTCGACATCCGCACCGTGCAAGGTCGCGGGTCGTTGCCGACGGTGCTGCG CCAAGCCGGCGCCGACGATGCCGACATGCTCGTGGCCGTGACCAACAGCGATGAAACCAACATGGTCGCCTGCCAGGTCGCCCACACGTTGTTCCACACC CCGACCAAGATCGCCCGGGTGCGCGAAGCGTCCTACCTGACCCGCGCCGACCTGTTCGACAACGAAGCGATCCCGGTGGATGTGCTGATCAGCCCCGAGC AGGTGGTGACCAACTACATCAAGCGCCTGATCGAGCACCCCGGCGCCTTGCAGGTGATCGACTTTGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGC
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVG CADKLKKPWAKALINAVLRRAQRESETLLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHTRDAYLALLGEAGIPAIPCQ YSRDGIVLETPGDVRALPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVKENLERLGLEAELIAA DGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIEAFLARTPGARELDIA SQAGLKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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