Pseudomonas brassicacearum PA1G7, AW28_RS20435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACCTGCTGAAGAAGATCAGCTTCCCCCGGATCTGCCTGCCGGTGATCGTGCTGTTCAACGCCGGAATCAACTTCGCAATCATCCTCGGGCTGTTTCTCG GTTTCCTGTTGATCACCGGGCGCTGGCCGGGCATTACCTTGCTGGCCTTGGTACCGCTGCTGGCCCTGCAAGTGATGTTCGCCGCGGGGTTGGGCATGCT GCTGGGGATCCTCAACGTGTTTTTCCGTGATGTCGGGCAGTTGTTCGGCATTTGCCTGCAATTCTGGTTCTGGCTCACGCCGATCGTTTACCCGATGACG ATCCTGCCGCCGCCGATCCAGCAATTGCTCGCTTTCAATCCCATGACCGCCCTGATGCAGAGCTACCAGAACCTGTTTCTCTACAACCAATGGCCGGTCT GGAGCTCGCTGGTGCCGTTGCTGGTGGTCGGCCTGCTGTTATGCGCCTTGGGCTTGCGCATGTTTCGTCGACGCGGCGGTGAAATGGTGGACGAACTCTG
|
|
| DNA Sequence for Gene |
>AW28_RS20435
ATGGGACATTTGCGCGTCAGTGGCCTGGGCAAGGCCTACAAGCAGTATCCGAACCGCTGGAGCCGGCTGTTCGAATGGTTGATCCCCTTTTCCCGCCAGC GTCATCAGTTGCACTGGATCCTGCAAGGCGTGGATTTCGAGATCCAGCCCGGGGAAGCCGTCGGCATCGTCGGGGTCAACGGTGCCGGCAAAAGCACGTT GCTCAAGATGATCACCGGTACCACCCAACCCACCTGCGGCCACATCCAGTTGCAAGGTCGTGTCGCCGCACTGCTGGAACTGGGCATGGGCTTTCATCCA GACTTCACCGGCCGCCAGAACGCGTTCATGGCCGGACAGCTGCTAGGCATGCAGGTGGAAGAAATCGAAGCCTTGATGCCCGAGATCGAAGGGTTTGCTG AAATCGGCGAGGCCATTGACCAACCGGTACGCACCTATTCCAGCGGCATGCAGATGCGCCTGGCTTTCAGCGTCGCCACCGCCCGGCGTCCGGACATCCT GATCGTCGACGAGGCGCTGTCAGTGGGCGACGCCTACTTCCAGCACAAGAGCTTCGAGCGCATCCGCAGCTTCCGCAAGGCCGGAACCACGCTGCTGATC GTGTCCCACGATCGCTCGGCGATCCAGTCAATCTGCGACACCGCCATCCTGCTGGAGCACGGGCGCATGGCGATGCGCGGCAAGCCCGAAGAAGTGATGG ATTATTACAACGCGATGCTGGCCCAGCGCGAAGGCCAGGTGGTCCGCCAGGAAATGCTCGCCAACGGCCAGGTGCGCACGATTTCCGGCACCGGCGAAGC CGGCATCATCGATGTACAACTGCTCAACAGTCAGGGGCAGCCGGTGGAAGTGGCCGAGATCGGCCAGCCGATGGTGTTGCAAGTGCGGGTTGAAATCCGC CAGGACATCGAGCGGCTGGTGCTGGGCTTTTTGATCAAGGACCGTCTTGGCCAGCCCATGTACGGCATCAATACCCATCGCCAGGACAAAGCTGTGACCG ACCTCAAGGCCGGCGAACAGATCACCTTCCGCTTCAGCTTCGATATGCGCCTGGGCAAGGGCAATTACTCCGTCGCGCTCAGCCTGTCGCGGCTGGATTC GCACCTGGACCGTAATTTCGAATGGCGCGACTACGGGTTGGTGTTTCACGTCATCAATAATCGCCAGGAGGATTTCGTCGGCTGTTCCTGGCTCCAGGCC GAGACCTGCATCCGGCGTTCGAGCCAGCCTGTCGTCGAAGCGGTGCCGCAAAAGGAGTTGCCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCGTCTGTTGGTGGAATGCACCTATGTGTTCGAACACCCGGAAGTCAATTCCGGCATTCAGCGCGTCGTGCGCAATGTGATTCGCGAACTGCCGGCCAA GGATGGCGAACGTGAATGCATTCCAGTGGTCATGCTGCAGGGCAAGTTGTACGAGGCCAAGAGCCTGGCACCGCTGTCGACCAATAAACTGGATCTGGTC AGCCTACGGATCCGCTGGGAACAGATGGCCAACCTGTTCTGGTTCTGGCACAGGACGCTCGCACGGCAGTGGCCCTTCAGCCGATCATTGTGGGCCCGTC GCCTCCTGTACGTTGGCTGCCGACTGTTCGCCTTCGGCTTCTTGAGCATACCGATACGTTTGTTCGACCGTGCCCTCAAAGGCCAAGAGCTGCCGAAGCG TTGCGTACCGCTGGAGCATCGGGCCGGCGATCAACTGGTCTTGCTCGATTCATCCTGGCACTCGGATATCTTCCCCCTGGCCGAACAGCTCAAGCGCGAT
|
|
| Amino Acid Sequence |
>sugar ABC transporter ATP-binding protein
MGHLRVSGLGKAYKQYPNRWSRLFEWLIPFSRQRHQLHWILQGVDFEIQPGEAVGIVGVNGAGKSTLLKMITGTTQPTCGHIQLQGRVAALLELGMGFHP DFTGRQNAFMAGQLLGMQVEEIEALMPEIEGFAEIGEAIDQPVRTYSSGMQMRLAFSVATARRPDILIVDEALSVGDAYFQHKSFERIRSFRKAGTTLLI VSHDRSAIQSICDTAILLEHGRMAMRGKPEEVMDYYNAMLAQREGQVVRQEMLANGQVRTISGTGEAGIIDVQLLNSQGQPVEVAEIGQPMVLQVRVEIR QDIERLVLGFLIKDRLGQPMYGINTHRQDKAVTDLKAGEQITFRFSFDMRLGKGNYSVALSLSRLDSHLDRNFEWRDYGLVFHVINNRQEDFVGCSWLQA ETCIRRSSQPVVEAVPQKELP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|