Pseudomonas brassicacearum PA1G7, AW28_RS20035

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum strain PA1G7 Scaffold2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTGAGTTCCGCATCCAGCAGACGATGATCCAGCCGGTGGAAAACAACCCGCTGAAATTCGCCCCCAATGTGGATGAAGCCTTGCTGTTGCTGTTGCGCC ACGGCAACCAGGCGTTCATGGCCCCGGACGCGGCGGTGCGTGACAGTTTCGATGACTTGCGGGCCCACCAACTGGCGGTGATGGCCGGCGTGGAAGCGGC CATCAAGCATTTGCTGGGGCGTTTCGAGCCGGCGCAACTGGAAGAGCGCATGGCCAAGCCCGGTGGGCTCTCGGGTATTTTCAGCGGCTCGCGACAGGCC CAGTACTGGCAGCAGTTTACCGAGCTCTACAGCAACATTTCCCGGGAAGCCCAGGAGGATTTCCAGGACCTGTTCGGTCGCGAGTTCAGCCGCGCCTACG AAGAACACAGTACGCGACAGCGACGCCGCTAAGCGGCGTCGTCCCATAACAAGATTGATCGGCACACAACGGATAGCTCAAACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>AW28_RS20035
ATGATTCCCAGGTTTTTACTCGCAGTCGCCACCGTGCTTCTGCTGACGGCGTGCGCCAAGGATGCGGCCAACCCCCAGCCCGAAGAAGCTGAGGCCGACA CCGCCGCCATCGAGCTGCACTTTCACGCCATTGCCGGCCTCAACCCCGGCGCCACCGGCCAGCCGGCCCCGGTCCGGGTGCGCATTTTCGAACTGAAAAA TGCCGCGACCTTCGGCCGTGCCGATTATTTCGCCCTCGCCGAACGGGCCCAGGCAACGCTGGGCGCCGACCTGATCGACCAGGACGAGGTGCTGATCCAG CCCGGCCAGCAACTGAGCCTGCAACGCGACCTCGACCCGGCCACGCGGCATATCGGAATACTGGTGGGCTATCGCGAGCTGGACCAGTCGCTGTGGCGCA CGGTGATGAACGTCCCGGCGCGCGAATACACCGAATACCAGATCAGCCTCGATGTGCGCGCCGTGCGCAGCGCCGTCGTCGTCCCCCCATCCAGCCCTGC CCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAATCGGAGCCCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACGCAGCACTTCCAACAGCATGACCGTTACCTGGAAA ACCTCATCGACGCACGCAGCCGCCCGTTGTCGGCCGGCGCCTGGGGTTTTTCCGAATTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGCGAT CATCTCGGCGCGCGGCCTGTTGCCGGACGGTACGCCCTTCAACATTCCCCAGGATGACCTGGCACCAACCCCGCTGAACGTCGACGACAACCTGCGCGAT GGCCTGGTGTACCTGGCCTTGCCGCTCAAGCGCGCCGGCGCCCGGGACACCGTGGACGAAGGCGAAGACCTCGGCGCTGCGCGTTATGTGAGCCAGGTGT GCGAAGTGCGTGACGACAACGCACCGTTCGAAAACCGCGCACCGGTGGCCCTCGGCTCGCGGGCGCTGCGGCTGTTGACCGAACAGGATGGCATCGGCGA
Amino Acid Sequence
>type VI secretion protein
MIPRFLLAVATVLLLTACAKDAANPQPEEAEADTAAIELHFHAIAGLNPGATGQPAPVRVRIFELKNAATFGRADYFALAERAQATLGADLIDQDEVLIQ PGQQLSLQRDLDPATRHIGILVGYRELDQSLWRTVMNVPAREYTEYQISLDVRAVRSAVVVPPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site