Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGTGGCGCGAAACTGTCGAATGCGATCCTGATGGACTGGAAGGACCGTTTCATCGCGGCCTACGACGTCGAATTGCAGGCCTTCATCGACGGCGTGCGCG CCGGGCAGGTGGGCGGGCCGTCGGCCTGGGATGGTTTTGCCGCAGCGGTGGCGGCGGATGCCTGTGTCCAAGCGCAGCAGAGTGGGCAGATCGTCAAGGT CGAACTGCCCGAGCGCCCGCGTTTCTACGGCTAACACCGTCCAAAAATGTGGGAGCGAGCTTGCTCGCGATAGCGGTGGGTCAGTCGACATTACTGCTGG AGGATCCGCCGCCTTCGCGAGCAAGCCCGCTCCCACAGTCGACCGCGTTTCCCCTGAAGGTACTCGGTCAAATTGTGGGAGCCGAGCTTGCTCGCGATGG CGGTGGATCAGCTTGCATTGATGCTGAATGTGCCGCCGTCTTCGCGAGCAGGCTCAGCTCCCACAGGGACTGCATTCAAACCGTGATCTAAGGAGTTTTC
|
|
DNA Sequence for Gene |
>AW28_RS14395
ATGCGAATCGGACTAGTGGGCTACGGCAAGGGCGGGCGGTTTTTTCATGCGCCGCTGATCAGCAGTCTGCCCGGGGCTACGTTCGTCGGCGTGGTGACCC GGTCTGCCGAGCGGCGCCAGCAACTGGCGAGTGATTATCCGCACGTCCAAGCCTTTGACTCCCTCGAAGAATTGGTCGCAGCGGGCGTTGATGCGGTGGT GGTGTCCACGCCGCTGGACGGTCGCCCGGAGGTGGTGATGCAAGCCATCGACCTCGGCGTGGCGGTGGTCAGCGACAAGCCTTTTGCCTGGGATGCAGCA CAGGCCGAGGCGATGGTGATGGCCGCCGAACAACACAACGTGCCGTTGAGCGTGTACCAGAACCGCCGTTGGGATTCGGACTTCCTGACCTTGCGCAAAC TGCTGGCGTCAGGCGCCCTGGGGCAGGTCATTCGTTTTGAATCCAGCGTCGAGCGCTATTCGCCGGCCTCGGTCGGCAAAGGCAGCGGAGGCGGGTTCCT GCGCGATTTGGGCAGCCACCTGGTGGACCAGGCGCTGCAACTGTTCGGGCCGGTGGAGCGGGTCTACGCCGAGCTGGACTACCGCCAGCCCGGCCAGGTG TTCGACAACGGCTTCTTCATGTCCTTGACCCATGCCAGCGGCGTGATTTCCCACTTGAGCGGCAATTGCGTGCAAAACGCAGCGCGCCCGCGCTTTCGGG TCAACGGCACCCAGGGCTGCTATACCGTTGAAGGCCTGGACGGCCAGGAAGCCCAGGCGCTGGCGGGCCTGAGCCCGGCGACCGAGGGTGAACGCTGGGG CGCTGAAGAGCATCGGCGCTGGGGCTGGTTCGAACACGGCACCGAGCGCGAGCGGGTGACCTCGGAGCGTGGCTGCTGGCTGGCGTTCTACCAACACCTG CAAACCGCGTTGCAGGGCGCTGGCCCGCTGCCGGTGGAGGCCCGTGATGCATTGGCGACCACGCGCATTCTTGATGCCGCCAGGCAGAGTGCCGAGCAGG GCGAAGTGGTGCGTTTATCGACGCCTGTCGGCCATGGAATAAAAAACGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
AATTCTAAAATGAGTTGATATGGAAAATATTTTCCAATAAAGTCAATTCCAGGTTACCGACAATCCTGTCTGTCTCCCGCCAAGCCAGCCTTGAACGGAT GCCAGACGAAACAAAAACAAGAAACACAGCTAGGTACCGTCGATGAAAACCTTCAGCCGCTCTGCGTTTCACCTGCCACATCTGCTGCGCCTGTCCGCAG TTCTCCCCCTGTTCGAATCCCTGTGTATCCAGCGTAACGGCGCCATGGTGTGTTGCATGCCCGGCGCGCCCATCGTGCGTTTGCCCCGTTCCTGATCCGT CACGCCTTATCCATAAAACCAACAAAAAAGTGGAGAAAGACCGTTCATGAAGACCAAGACCCGTATCGCCTCGCTGGCCCTGTCGTTGATGCTCACCAGC GGCGCTGCCCTGGCGGACCTGAAGATCGGCGTCAGCATGTCCCAGTTCGATGACACCTGGTTGACTTACCTGCGCGAATCCATGGACAAGAAAGCCAAGT
|
|
Amino Acid Sequence |
>oxidoreductase
MRIGLVGYGKGGRFFHAPLISSLPGATFVGVVTRSAERRQQLASDYPHVQAFDSLEELVAAGVDAVVVSTPLDGRPEVVMQAIDLGVAVVSDKPFAWDAA QAEAMVMAAEQHNVPLSVYQNRRWDSDFLTLRKLLASGALGQVIRFESSVERYSPASVGKGSGGGFLRDLGSHLVDQALQLFGPVERVYAELDYRQPGQV FDNGFFMSLTHASGVISHLSGNCVQNAARPRFRVNGTQGCYTVEGLDGQEAQALAGLSPATEGERWGAEEHRRWGWFEHGTERERVTSERGCWLAFYQHL QTALQGAGPLPVEARDALATTRILDAARQSAEQGEVVRLSTPVGHGIKNE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|