Pseudomonas brassicacearum PA1G7, AW28_RS14255

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum strain PA1G7 Scaffold1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGTGCACCAACCGCCATCTGGCCCAGAGCCTGCCGGCCGGCACCCCGTTGGGTTTCGAGCGCCCGGGGCCGGTGGCCTGGGCACGCCTGCGCAACCCAC CCAGCCCGCAAAGCCTGCCGCGCCTGGACGGCGAATCGCGCTGGCGGCTGGTGTCGCAATTGACCCTCAACCATTTGTCGCTGGTCGAAGGCCCCCAGGC ATTGGACGCCCTGCGCGAGATTCTCCAACTGCACAACCTGCGGGACGAGGCCAGCGCCCATCGCCAGATCGAAGGGGTATCGGGGCTGGGCTGCGACCGG GTCATCGCCCATGTCGGCGAAGACGCCTGGCGCGGCTGGCGCAACGGGCTGGAGGTGCGCCTGCAACTGGACCCGCAATACTTCGTCGGTAGCAGCGCCG TGCTGTTCTCCGGGGTGCTGGCGCAATTCTTTTCCCTTTACGCCACCGCCAATCGCTTCGTGCGCACCGTGCTGGTCCAGTCCGACAAGGAGGTGAAGAC
DNA Sequence for Gene
>AW28_RS14255
ATGGCAACCCCAAGCCGGCAAACCCCTGGTGCTCTGAACCTGAGCCAGCGCCTGCGCCGCGACCCGCAACGCTTCGAATGGCTCCAGGCCTTGCTGCTGC TCGAACGTGAACATCCCCAGGCCGAGCCCTTGGGCAGCGGCACCGCGCCGCACGCCGAAGCCTTGCGTCTGCGCGGGCCCTTGACGCCGTTGTTCGCCGC CAGTGAAGTCGAGAGCCTGAGCCAGGAACCCGGCCTACCGCCAACCCTGACCACGCCGATCTTCGGCCTCGGCGGCCCCGACGGCCCGTTGCCCTACGCC TACCAGGAATGGCTGCAACAACGGGCACGGGCGAAGGACCACGCCCCAGCGGAATTCCTCGACCTGTTCCAGCATCGCCTGCTCAGCCTGCTTTACAAGG TGATGCGCAAACATCGCATCGCCGTGGGTTTTACCGCCCCAGGCGCGTCCGCCGTACACGCGCAACTGCGGGCGTTGACCGGCTTGCTGCCCAAGGCCTT GCAGGAACGCCAGGCCGCCCCCGACTCGGCGGTACTGGCCTGCACCGCGCTGTACGCCGATGGCCGGCGCTCCCTGGATGGGTTCGCGGCGATTGTCCGT GAACAGTTCGGGCTGCCCGTGGAGCTGACCGCCTACGAAGGTGGCTGGCGTGAAATCCCGCCAGCCAGCCGCAGCCGCTTGCAACCGGGCGGGCGCAACC TGTGCCTGGGCCGCAACGCGGTGACCGGCACCCACGTCTGGGACGAACATGCCGGCGTGCGCCTGACCCTCGGTCCGCTGACCACGGGCCAGGCCAGCGG ACTGCTGCCCAACGGCGAAGCCCATGCGCTGCTCGCCAGTCTCTACGCCCTGTACTTCGGCCCCGACCTGGATTGCACCCTGGTGTTGCTGATCCGTGGC GCCGGCCCACTGCAACTGGACCGCCAGGCAGCGCCACGGCTGAACTGGAACGGCGGCCTGCAACGCCAGCCGACCCTCGCCGTGCAACGGATCGAAACCC GCCTTCGTCAGCCGGAGATAGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTGGAACGGGCCGCGCAACGTTGCATGCAACGCAGCCATCATTACGTG GAAATCGAACACCTGCTGTTGGAGTTGCTAGACATCGAGGGCGGTGATTTTGCCTGCCTGCTGCCACGATTCGGTCTGGAGCGTGACGCGGTGGCGACGG AAACCAACAAGGCCCTGGACCTGTTCAAATCCGGCAGCACCCGCACACCCGCCCTGTCGGCACAAACCATCGGCCTGCTGGAAGACGCCGTGGTCCAGGC CAGCGTGCTGGGCCTGGACAGCATCCGCTCCGGGCTGTTGCTGCTGGCGCTGCTGGACCGCGATGAGCGCCGCAGCCTGCTGCTCAACAGCGCCTCGTCG TTGCTGCGCATTCCTCGCGACGCCCTGCGCGCCCACCTATTGGAATGGACCGAAAGCTCCCGCGAGCATGCCGGTGGCGTGCGCCCGGCCAAACCCGGCG
Amino Acid Sequence
>type VI secretion protein
MATPSRQTPGALNLSQRLRRDPQRFEWLQALLLLEREHPQAEPLGSGTAPHAEALRLRGPLTPLFAASEVESLSQEPGLPPTLTTPIFGLGGPDGPLPYA YQEWLQQRARAKDHAPAEFLDLFQHRLLSLLYKVMRKHRIAVGFTAPGASAVHAQLRALTGLLPKALQERQAAPDSAVLACTALYADGRRSLDGFAAIVR EQFGLPVELTAYEGGWREIPPASRSRLQPGGRNLCLGRNAVTGTHVWDEHAGVRLTLGPLTTGQASGLLPNGEAHALLASLYALYFGPDLDCTLVLLIRG AGPLQLDRQAAPRLNWNGGLQRQPTLAVQRIETRLRQPEIA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site