Pseudomonas brassicacearum PA1G7, AW28_RS14215

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum strain PA1G7 Scaffold1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CACCGCTGGATTTTCTCGAATTGCAGCGCGGCTACGAGCCGTTGCTCGACTGGCTGGAAACCACCCTGGAACTGGTTCGTGCCGGCTATCGCAGCCTGGC CTTCGAACGCAATGAGCAGGTCTTCTCGATCCAGTTGCCTGACGACCAACCGGACCAACGCCTGGTGATCGGCCTGCGCATGCCCAACGGCGCCAGCGAG CAGGCGGCGGGCGAGTGGTTGCGCGGGGCGATCATCGCGTCGGCGCGGCATATCCCGCTGCTGAGCCGACAGCGCATGAGCGGTCTGCCTCACCAGGCCA TGAGCCGCAACGAACAGGTGGCCTACAGCGTGGGCGACGACACCCGTTTGTTTGTGGTGGCGGCCAGCGGGCAATGGTTCGACGCGCAATTGCCGCTGCA CATCGTGGCGCCGGCCTCGGCCCAGGCCAGCAGCCCGTGGCAAGTGGTGTTGTTCGTGGCGCAAGCCAGTGAAAGTGCCTGATCGCAAAAGGGGAGTCGT
DNA Sequence for Gene
>AW28_RS14215
ATGCCTGATGGAAGTGGCGGGGCGGTTCGGAGTCTGCATGAGGCGCCGCTGAGCAGCGCTTTTCGCCAGGCCTGGCTGAAGTGGTCCCAGGAATGGCAAG ACTTGCCCAAGGACAGCGACCCTGCGGCATTGGTCAATCGGGTGGTGGAGTTTTCCGGGCGCAGCGCCCAGCGTCTGTGGCGGGTGGCCTTCGCCACCGT CGGCGATGCCGCTACCGAGCAGGTCAAGTCGCTGGTCTATGCCTTCGTGGCGCTGGTGGACGAAACCTTGTTGTTCAGCCCCTGGCCCGGACAACTGGCC TGGCAGCAGCACCCCCTCGAATCACGCATGTATGCCAGTCGCCAGGCCGGCGAGCGCTTGCCGGCGGCGATCAAGAAACTGCTGGACGAGCAGATGCCCG GCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGCCGGTTGCGCGGCGAGCCTGGCCAGGTTCAGCATGAGAAATGGCG CCTGGCGTTGTTCACGTTTGCCTGGCAGCACGAACCCGATTATGTCGATGTCAGCCAGCGCCTGGCGCTGTCTTCGGCGACGCCGCCAGTGCGCATGCCG GTGCAGCAATCACTGCCGGACGGCTTTCGCCTGGGGCTGGCGATCCTGGCGATGGTGTTGTTGTTGACCGGGCTGGGGCAGGTGTTCTGGCGTGACATTC GTTTGGAGCTCGAACCGGTGCTGCAACTGAACGAGTCGGTGGTTCAGGAGCAGGACTCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACCCTGAGTATCGTTGCCCTGGTGGTGCTCGCCATCGTCGTGGTGCTGTTGATCGCGGCCCTGATCTGGTGGCTGCGGACCCAAGGCGGAGCGGCGAT CCGCAGTTTCTATGGGGCGGTGCGCCGCATGGAACAGGAGCAGGGCACCCGGGACCGCTATCAGATGCCTTGGCTGATGATGCTCGGTAACGAAAGCGAC GGCGCCCAACTGTGCGCCCAGTGGCGCTTGCAACCGACCGACAAGGCCGCCTGGTTCGGGCGCTGGTTTTCCGATGCCGAGGGCTCGGTGCTGGTGGTGC CCCAGGCGTTGTTCCTGCCCGATGAAGGCATGAACCGGCAACGGGGTAATTGGTGGCGCCTGTTGGGGCTGATGTTGCGCTTGCGCAGCAAGCGACCATT GGATGCGGTGATCTGGACGGTGCCGTTCAGCACCCTCGATGACATCGAACACACCACCGAACTGAGCCTCAAGGTCCGGCGGTGCTTTATCGACCTGTTG
Amino Acid Sequence
>type VI secretion system protein ImpK
MPDGSGGAVRSLHEAPLSSAFRQAWLKWSQEWQDLPKDSDPAALVNRVVEFSGRSAQRLWRVAFATVGDAATEQVKSLVYAFVALVDETLLFSPWPGQLA WQQHPLESRMYASRQAGERLPAAIKKLLDEQMPGTRDLANVYLQCLILGFQGRLRGEPGQVQHEKWRLALFTFAWQHEPDYVDVSQRLALSSATPPVRMP VQQSLPDGFRLGLAILAMVLLLTGLGQVFWRDIRLELEPVLQLNESVVQEQDS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site