Pseudomonas brassicacearum PA1G7, AW28_RS11440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain PA1G7 Scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCTGGTGTTGGGTGTGCTCTATGAAAGCTACATCCATCCGCTGACCATCCTGTCTACGTTGCCATCGGCCGGGGTCGGCGCATTGCTGTCGATCTACG CGCTGGGTGGCGAGTTCAGCCTGATCTCACTGTTGGGGCTGTTCCTGCTGATCGGCGTGGTGAAGAAAAACGCCATCCTGATGATCGATCTGGCGCTGCA ACTGGAACGTGCCGGGCAGACGCCGCTGGAGTCGATCCGCAGCGCTTGCCTGCTGCGGTTGCGGCCAATCCTGATGACCACGCTGGCGGCGATCCTTGGC GCCTTGCCGTTGCTGCTCGGTGCTGCCGAGGGCTCGGAAATGCGCCGGCCATTGGGCCTGACCATCATCGGTGGGTTGGTGTTCAGCCAGGTACTGACGC TCTACACCACCCCGGTGGTTTACCTATATCTCGACAAACTGCGCCATCGCTTCAATCGCTGGCGCGGCGTGCGCACTGATGCTGCCCTGGAAACTCCGCT
|
|
| DNA Sequence for Gene |
>AW28_RS11440
ATGACCGATCGTTCGCCTTTCAATCTTGTCGCAACACTGGCGACTGCCCGTGGCTCGCGGGTGCTGAGCCTGGTGCTGTGCGTGGCGATGCTCAGTGCCT GCGCCGTCGGCCCGGATTATCAACGTCCCCAGGCTGCCGCCCCGGTGCAATACAAGGAGGCCCAGGGCTGGCGCCAGGCCAATCCCAGCGATGCGATGGC CAGGGGCGCCTGGTGGGAGCTGTACGGCGATGCGCAACTCAATGGCCTGGTGAACCAGCTCAATGCGTCCAACCAGACCGTGGCCCAGGCCGACGCCCAG TATCGGCAGGCCCGGGCACTGGTGCGCAATGCCCGTGGCGCATTTTTCCCTACCGTGGACCTGACCGTTGGCAAGACCCGCTCCAGCCAGGGCACCGGTA GCAGCAGTTCGAGCCTGAGCAGTTCGTCCAGCGGCATTCGCGATACCTATAACGCCCAGGCCGGCGTCAGTTGGGAGGCGGACGTGTGGGGCAAGTTGCG CCGCACCCTGGAAGCCGACGAGGCGAGCGCGCAAGCCAGTTTTGCCGACCTGGCGGCGATGCGTCTGAGCCAGCAATCGGAACTGGTGCAGAATTACTTG CAGTTGCGGGTGATCGATGAACAGAAACGCTTGTTGCAGACCACCGTCGACAACTATCAGCGCTCCCTGAAAATGACCGAAAACCAGTACCGCGCCGGGG TGTCCGGCAAGGACGCGGTGGCCCAGGCGCAAACCCAGCTCAAGACCACCCAGGGCGACCTGATCGACCTGATCTGGCAACGGGCCCAGTTTGAAAACGC CATCGCCGTGCTGATCGGCCTGCCGCCCGCCGAATTCAACCTGGCCGAGACCCAGGACATCCCGTCATTGCCGCAAATTCCGGTGGAGCTGCCTTCGCAG TTACTCGAGCGCCGGCCGGATATCGCCTCGGCAGAACGCTCGGTGATGGCCGCCAACGCCAACATCGGGGTCGCCAAGGCCGCGTATTACCCGGACCTGA CCCTGAGCCTCAGTGGCGGCTACAGCAGCAGCACCTACGACAACTGGGTGAGCGTGCCGAACCGCTTCTGGTCGGTAGGGCCACAACTGGCGATGACGCT GTTCGATGGCGGCCAGCGTTCGGCAGAGGTCGACCGTACCGTCGCGGCGTATGACCAGACCGTCGCCACCTATCGCCAGACCGTGCTCGACGGCTTGCGC GAGGTGGAAAACTACATGATCCAGCTCAAGGTGCTGGAAGACGAAGCCCGCGTGCGCCAGGAGGCTCTGGACGCCGCCCGGGAATCCCTGCGCCTGACGC AGAACCAGTACAAGGCCGGGTTGATTGCCTACCTCGATGTGGTGACCGTCCAGGCCACGGCCTTGAGCAATGAACGCAGTGTGCTGAGCTTGCAGCAGAG CCGCCTGATCGCCAGCGTGCAATTGATTGCGGCGCTGGGGGGTGGTTGGGACGGGCAGCTGCAGGCGGACGAGAAGCCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCACTGTGACGGGGTGAGTAGGAGCAAGGCTTGCCCGCGATGAAAGCAATGCGGTCTTTCAAGAATCGAGTTGCCTGTTTTGCGGGCAAGCCTTGCTCCC ACAGAGTTCCCCTTTCCCATAAAGATTTCCTTGGTCATGTCGGCAGTCAGTCCCGCTTTTGGCCGATGCACTGTCTACGTCCTGTCGCGATGGCTTGTTA TAGTTCAAGCCTCTTTTCAGCCGGTAAAGGATCACTGCCATGTCGCAATACCAAGCGTTCAACGTCGAACTTGCAGACAACATTGCCCATGTGCAGATCA ATCGCCCGGAAAAGATCAACTCGATGAACGCTGCGTTCTGGAGCGAGATCATCGAGATCTTCCAGTGGATCGACGACACCGATGCCGCACGGGTGGTGGT GCTGAGCGGTGCCGGCAAGCATTTCTCCTCGGGGATAGACCTGATGATGCTGGCGGGCGTGGCCAACGAGTTGGGCAAGGACGTAGGGCGCAATGCACGC
|
|
| Amino Acid Sequence |
>RND transporter
MTDRSPFNLVATLATARGSRVLSLVLCVAMLSACAVGPDYQRPQAAAPVQYKEAQGWRQANPSDAMARGAWWELYGDAQLNGLVNQLNASNQTVAQADAQ YRQARALVRNARGAFFPTVDLTVGKTRSSQGTGSSSSSLSSSSSGIRDTYNAQAGVSWEADVWGKLRRTLEADEASAQASFADLAAMRLSQQSELVQNYL QLRVIDEQKRLLQTTVDNYQRSLKMTENQYRAGVSGKDAVAQAQTQLKTTQGDLIDLIWQRAQFENAIAVLIGLPPAEFNLAETQDIPSLPQIPVELPSQ LLERRPDIASAERSVMAANANIGVAKAAYYPDLTLSLSGGYSSSTYDNWVSVPNRFWSVGPQLAMTLFDGGQRSAEVDRTVAAYDQTVATYRQTVLDGLR EVENYMIQLKVLEDEARVRQEALDAARESLRLTQNQYKAGLIAYLDVVTVQATALSNERSVLSLQQSRLIASVQLIAALGGGWDGQLQADEKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|