Pseudomonas brassicacearum PP1_210F, P908_RS27770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCGAGCCGAGAACCGGCTTCATGCTGATCGACACGCTGCTGGCCGATGAGCCCGGCGCGTTTCTCGATGCGCTGCACCACCTGATCCTGCCGGCCATC GTGCTGGGCACCATTCCACTGGCGGTGATCGCCCGCATGACCCGTTCTTCGATGCTCGAAGTGCTGCGCGAGGACTACATCCGCACCGCCCGCGCCAAAG GCCTGTCGCCTTCGCGCGTGGTGTTCGTGCATGGCCTGCGCAACGCGCTGATCCCGGTACTGACCGTGGTCGGCCTGCAAGTCGGCACACTGCTGGCCGG TGCGGTCCTGACCGAAACGATCTTCTCCTGGCCGGGCATCGGCAAGTGGCTGATCGAAGCCATCGGCGCCCGGGACTATCCCGTGGTGCAGAACGGCATC CTGTTAATCGCCTGCCTGGTGATTCTGGTCAACTTCGTCGTGGACATCCTCTACGGCTTTGCCAACCCACGCATCCGTCACCAGCGCTGAGATCAAAACC
|
|
| DNA Sequence for Gene |
>P908_RS27770
ATGAGTACTCCAACTACCGCGGTAGCAGTCGATCAAAGCCTGCTGTATCCGTCCCCGTACAAAGAATTCTGGCACGCGTTTTCCCGCAACAAGGGCGCCG TGGCCGGGCTGCTGTTCATGATCCTGGTGGTGTTCTGCGCGATCTTCGCCCCCTGGGTCGCACCTCACGACCCGAGCGAGCAGTACCGCGACTTCCTGCT GACGCCGCCGGCCTGGCTTGAAGGCGGGCAGATCCAGTTCCTGTTAGGCACCGACGAACTGGGCCGCGACTTGCTCTCGCGCCTGATCCAGGGTTCGCGC CTGTCGCTGCTGATCGGCTTGTCGTCGGTGGTGATGTCGCTGATCCCGGGCATCCTGCTGGGGCTGTTCGCCGGGTTCTTCCCGCGCCTGCTCGGCCCGA CCATCATGCGTTTGATGGACATCATGCTGGCCCTGCCTTCGCTGCTGCTGGCCGTGGCGATCGTCGCCATCCTCGGCCCAGGCCTGATCAACACCGTGAT CGCCATCGCCATCGTCTCGCTGCCGTCCTACGTGCGCCTGACCCGTGCCGCCGTGATGGGCGAACTGAACCGCGACTACGTGACCGCCGCCCGCCTGGCC GGTGCCGGCCTGCCACGCCTGATGTTCATCACTGTGCTGCCCAACTGCATGGCACCGCTGATCGTCCAGGCGACGCTGAGCTTTTCCTCGGCGATCCTCG ACGCCGCCGCCCTGGGCTTCCTCGGCCTCGGCGTGCAGCCGCCCACCCCGGAGTGGGGCACCATGCTGGCCTCGGCCCGCGACTACATCGAACGCGCCTG GTGGGTCGTGAGCCTGCCTGGCTTGACCATTTTGCTCAGCGTGCTGGCAATCAACCTGATGGGCGACGGGCTGCGCGATGCGCTGGACCCGAAACTCAAG AATGCCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGATTCCCATGTCACTGCTAGAAATCAAGAATCTCAACGTCCGCTTCGGCGACGCCACCGCTGTGCCGGTGGTCGACGGCCTGGACCTGACTGTGGAA AAAGGCGAAGTCCTGGCCATCGTCGGCGAATCGGGCTCGGGTAAATCCGTGACCATGATGGCGCTGATGGGGCTGATCGAGCACCCCGGCATCGTCACCG CCGATGCGCTGAACTTCGACGGCAAGAACATGCTCAAGCTGAGCAACCGCCAGCGCCGGCAGATCGTCGGCAAGGACCTGGCGATGGTCTTCCAGGACCC GATGACCGCCCTCAACCCTAGCTACACCGTGGGTTTCCAGATCGAAGAAGTCCTGCGCCTGCACCTGAAGTTGTCCGGCAAGGCCGCCCGCAAGCGCGCC ATCGAACTGCTGGAAAAAGTCGAGATCCCAGGCGCCGCCAGCCGCATGGACGCCTACCCGCATCAACTGTCCGGCGGCATGAGCCAGCGCGTGGCGATTG
|
|
| Amino Acid Sequence |
>peptide ABC transporter
MSTPTTAVAVDQSLLYPSPYKEFWHAFSRNKGAVAGLLFMILVVFCAIFAPWVAPHDPSEQYRDFLLTPPAWLEGGQIQFLLGTDELGRDLLSRLIQGSR LSLLIGLSSVVMSLIPGILLGLFAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVTAARLA GAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK NAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|