Pseudomonas brassicacearum PP1_210F, P908_RS26175 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGATCGACACGACCCAGATCAGCGACCAGAAAATCAGCGAGAGGATCCCCAGCACCCCATCGTGGTTGACAGGTACGCCGTAGGCACCGGAAAACACTT CCTTGAGGGTGTACAGCGGGCTCGTGCCGATGTCGCCATAAACCACTCCGACCGCCGCGACCAGCATGCTCAGCGGTTTCGCTGCCGAATGCTCGGCACC CACCGCCTGACTACTTGCATGACCCATCCAACACTCCTGATTCCAGACCTGGCTTCTTGAACGAAGCACTATGCTTTGTTGAGGCAGCATGCGCTGTTTT ACGTATTGTTACAGACGTTTTGTTGACTGTAGCAATCGTCAGAACGCAAAGGCGCGAAGCATAGCGCAGCACTCGTCGCATTTCCCGGTATAAAGCTGGT CAAGCAGCCCGGCCACAGATAGAATTGCGCACTTTTTGATCAGAGGCGCGCCAGGCGCCCTGTCTCGGCAAGAGACGATCCCCCTACACCGAGGTTAGAC
|
|
| DNA Sequence for Gene |
>P908_RS26175
|rimO
ATGTCCACCACTACCGCGCCAGCCAATCCGAAGGTTGGCTTCGTATCCCTGGGTTGCCCGAAGGCTCTGGTCGACTCCGAGCGCATCCTGACCCAGTTGC GCATGGAAGGCTATGACGTTGTGTCCACCTATCAGGACGCCGACGTGGTCGTGGTCAACACCTGCGGCTTCATCGACTCGGCCAAGGCCGAATCCCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTCACCGGCTGCATGGGTGTGGAAGAAGGCAACATCCGCAACGTGCACCCGAGCGTGTTG TCCGTGACCGGTCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCACGACGTGGTGCCGCCACGCCAGGACCATAACCCGCTGATCGACCTGGTGCCGC CACAAGGCATCAAGCTGACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTGAGCCGTCCGGTGGGCGATGTGCTCGACGAGGCCCAGCGCCTGGTCAAGGCTGGCGTCAAGGAACTGCTGGTAATCTCCCAGGACACCAGC GCCTACGGCGTCGACGTGAAATACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTGTGCGAAGCCCTCAGCACCCTCGGCG TCTGGGTCCGCCTGCATTACGTCTACCCATACCCGCACGTCGACGAACTGATCCCTCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTCCTCAAGGCCATGAAGCGCCCGGCGTTCGAAGACAAGACCCTGGCCCGCATCAAGAACTGGCGCGAGATCTGCCCGGAC CTGATTATCCGTTCGACGTTCATCGTCGGCTTCCCCGGTGAAACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTCGACCGCG TCGGCTGCTTCCAGTACTCCCCTGTCGAAGGCGCACCGGCCAACGACCTGGACCTGGACGTGGTGCCGGACGACGTCAAGCAGGACCGTTGGGAGCGCTT CATGGCGCACCAGCAGGCCATCAGCTCGGCGCGCCTGCAAATGCGCATCGGCCGTGAAATCGAAGTGCTGGTGGATGAAGTGGACGAGCAAGGCGCCGTG GGCCGCTGCTTCTTCGACGCCCCGGAAATCGACGGCAACGTCTTCATCGACAATGGCAGCAACCTCAAGCCGGGCGACAAAGTCTGGTGCAAGGTGACCG ACGCCGATGAGTACGATTTGTGGGCTGAGCAGATCGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCGCGGCTTCACAGACTCAATGTGATACCTGTGGGAGCCGAGCTTGCTCGCGATAGCGGTGCATCAGCCAGCATCCATTTTGGCTGACGCTACGCCATC GCGAGCAAGCTCGGCTCCCACAGGTGCTTTCACAAGCCGAAAAATTGAAAAGCCCCGTCATCATCACAAGATGCGGGGCTTTTTTGCAGCTATCGTATGG AGATATCCAGCACAAGGAACAGGCGGGCATGCGTCAGCATTCGGTCATCCACACACCGAAACCGAGCGATTACCAGGAACTGACCCAGGTGTGGGAGGCG TCGGTACGCGCCACCCACGACTTCCTGCCGGACAGCTACATCGAGCTGCTGAAAAACCTGGTGCTCACCCGTTACCTGGATGCGGTGATGCTCATCTGCA CCCGGGACGCGCGCCAGCGGATCACCGGTTTCGCCGGCGTCGCGGCCGGCAAGATCGAGATGCTCTTCATCGACCCGCAGCACCGTGGCCAGGGCCTGGG
|
|
| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTTAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL SVTGPQQYEQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKAGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLDLDVVPDDVKQDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAV GRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQIG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|