Pseudomonas brassicacearum PP1_210F, P908_RS25560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTTCCCTGGCCCTGGCCAGCACCATCGGCGCCGGCAACCCGCTGACCAGCGGCGACACCCCGCTGCTGACCTGCGACGTGTGGGAACACGCCTACTA CATCGACTACCGCAACGTTCGTCCGAAATACGTCGAAGCGTTCTGGAACCTGGTCAACTGGAAATTCGTCGCCGAGCAGTTCGAAGGCAAAGCCTTCACC GCCTAAGCGTCGATGCCAGACAAGAAAACCCGGCGTCGTGCCGGGTTTTTTTTGCCGGGCAAAAATGACCGCAGGCAAAATACCTCGGGTCTGGAACCCA AGAAAAAATCCCTGGAGGCCTCAAGTTGCGGCCCCTTCCAACCGACACAATGGTCGTAGAGCAATCACTCTGGAAAAAACGTACATCGGTGAGGTTTCAA GCGAAAACCCTTGTGTTTGATTGTCCCTTTGACTGACATCACAGGATTGCCAATACTCATGGCAACTTGACGCTACCCGCACGGAACAAGGAACCACTCT
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| DNA Sequence for Gene |
>P908_RS25560
TTGAAGCTGGAACTCAAGAACAGCTTGTCTGTGAAGTTGCTCCGGGTCGTGCTCCTCTCGGCATTGATCGTTGGCATGGTCTTGAGCTGCGCCCAGATCG TGTACGATGCCTACAAAACCAACCAGGCCGTCGCCAGTGACGCCCAGCGGATCCTCGACATGTTCCGTGATCCTTCGACCCAGGCCGTCTACAGCCTGGA CCGGGAGATGGGCATGCAAGTGATCGAGGGCCTGTTCCAGGACGAAGCCGTACGCATGGCTTCCATCGGCCATCCACGCGAAACCATGCTCGCCGAAAAA ACCCGGCCCTTGCAGCACTCCGAAAGCCGCTGGCTGACCGACCTGATCCTGGGCAAGGAGCGCACCTTTACCACGCAACTGGTGGGACGCGGCCCCTATA GCGAATATTACGGCGACCTGAGCATTACCCTCGACACCGCCACCTACGGCGAAGGCTTCATCGTCAACTCGGTGATCATTTTCATTTCCGGGATGCTGCG AGCCCTGGCCATGGGCCTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAACCATTGTCGCGGATCATCCAGCACCTGACCGAAATCAACCCCGAT CGCCCCAGCGAGCACAAAATCCCGCAGTTGCGCGGTCACGAACAAAACGAGCTGGGCCTGTGGATCAATACGGCCAACCAACTGCTCGAATCCATCGAGC GCAACACGCACCTACGCCACGAAGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTCCTCACCGGCCTGCCCAACCGCCAGCAGCTGCAACAGCA ACTGGACAAGATCCTGGTGGACGCCGGGCGCCTGCAACGCCGGGTGGCGGTGCTGTGTGTGGGGCTGGATGACTTCAAGGGCATCAACGAACAGTTCAGC TATCAGACCGGCGACCAGTTGCTGCTGGCCCTGGCCGACCGACTGCGGGCCCACAGCGGCCGGCTCGGCGCACTGGCGCGGCTGGGGGGCGACCAGTTCG CCCTGGTCCAGGCCGACATCGAACAGCCTTACGAGGCCGCCGAACTGGCCCAGAGCATCCTCGATGACCTGGAAGCGCCGTTCGCCATCGACGATCAACA AATCCGCCTGCGGGCCACCATCGGCATCACCCTCTTCCCCGAAGACGGCGACAGCACCGAGAAACTGTTGCAGAAAGCCGAGCAGACCATGACCCTGGCC AAGAGCCGCTCGCGCAATCGCTACCAGTTCTACATCGCCAGCGTCGACAGCGAGATGCGCCGCCGTCGCGAACTGGAGAAAGACTTGCGCGAGGCCCTGG CCCGCGAGCAGTTCACCCTGGTGTACCAGCCGCAGATCAGCTACCGCGACCTGCGGGTGGTGGGCACCGAAGCCCTGATCCGCTGGCACCATCCCGAGCA CGGCCTGGTGCCGCCGGATCTGTTCATTCCCCTGGCCGAGCAGAACGGCACCATTATCGCCATCGGTGAATGGGTGCTGGACCAGGCTTGCAGGCAATTG CGCGAATGGCACGACCAGGGCTTCCTCGACCTGCGCATGGCGGTCAACCTGTCGACGGTGCAACTGCACCACGCCGAACTGCCGCGGGTGGTGAACAATC TCCTGCAAATGTACCGGCTGCCGCCGCGCAGCCTGGAGCTGGAAGTTACCGAGACCGGCCTGATGGAAGACATCACCACCGCTGCCCAGCATTTGCTGAG CCTGCGCCGCTCCGGGGCGCTGATTGCCATCGATGACTTCGGGACCGGCTATTCGTCCCTGAGCTACCTCAAGAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCTCGACGACGAGGACGATGCAACCATCGTCCGGGCCATCATCCAGTTGGGCAAGAGCCTGGGGATGCAGGTCATTG CCGAAGGCGTCGAGACGGTCGAACAGGAAGCCTACATCATCGCCGAGGGCTGCCACGAAGGTCAGGGGTATTACTACAGCAAACCGCTGCCGGCACGGGA ATTGGGCCTTTACCTGAAGCAGGCCGAGCGCAGCAAGGTTTCCATCATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTCTCCCCCCGGCGCCAAGCCTTTGTAGGAGCTGGCGAAGCCTGCGATCTTCGGTTTGTTCGCCTGGGATTCAAGCATCAGTGAAAAGATCGCAGCCTC GCTTCGCTCGGCAGCTCCTACAGACGCTACCGAAGGCGGCAATCTCCCATCATTAAATAAGAAATATTTACACCTGCAACCCTTTACACATAATGCAAAT CTTTCGCATTATGTCGCAGTTTTGCGCACCTCGCGCCTGTCCCGTCCATCATCGAAGCAGGATGTTTGCCATGATTCGTATGCCCCTGGCTACTGCCAGT CTGCTGGCTATCGCTATTTCCCTCGCCGGTTGCGGCGAAGGCAAAGACAAGGCCGCCGCGCCGCAAGCGCCAACGCCTGCCGCCAGCACCGCGGCACCGG TCGCCCCTGCTGCCGCCGGCAAAATCGACGAAGCTGCCGCCAAGGCCGTTGTCGCGCACTATGCCGACATCGTCTATGCCGTCTACAGCGATGCCGAATC
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| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGMVLSCAQIVYDAYKTNQAVASDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDEAVRMASIGHPRETMLAEK TRPLQHSESRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGEGFIVNSVIIFISGMLRALAMGLVLYLVYHWLLTKPLSRIIQHLTEINPD RPSEHKIPQLRGHEQNELGLWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAPFAIDDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KSRSRNRYQFYIASVDSEMRRRRELEKDLREALAREQFTLVYQPQISYRDLRVVGTEALIRWHHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL REWHDQGFLDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDITTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDEDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYIIAEGCHEGQGYYYSKPLPARELGLYLKQAERSKVSII
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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