Pseudomonas brassicacearum PP1_210F, P908_RS25425

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGTGACAATGCAGCCATGGTCAAGCTGACCCTGGAAGACGGCAGCCAATACCCACACGAAGGCAAGCTGGAATTTTCCGAAGTGTCGGTCGACCAGAC CACCGGTTCGGTGACCTTGCGCGCCGTATTCCCCAACCCTGACCACACCCTGCTGCCGGGCATGTTCGTCCATGCACAACTGCAGGCCGGCGTGAACAGC GCGGCGATCCTCGCCCCGCAACAAGGCGTGACCCGCGACCTCAAAGGCATGCCGACTGCCCTGGTGGTGGGCCCGGACAACAAGGTCGAGCTGCGTCAGC TCAAGGCCAGTCGCACCGTCGGCAGCCAGTGGCTGATCGAAGATGGGCTCAAGGCCGGCGACCGCCTGATCACCGAAGGGTTGCAATACGTACGGCCCGG AGTGGAAGTCAAAGCCACCGAAGCCACCAATGTCGATGCCAAGAACCCGGCCCCCGCTCAGGCAGCTGATAAAGCAGCCGGCGGCAAAGGGGAGTAAACC
DNA Sequence for Gene
>P908_RS25425
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCCTGGGTAATTGCCTTGGTGATCATGCTGGTCGGGGCTCTATCGATCCTCAAATTGCCGATCAACC AGTACCCGAGTATCGCGCCACCGGCCATTGCGATCCAGGTGACCTACCCGGGTGCGTCCGCGCAAACCGTGCAAGACACCGTGGTGCAGGTCATCGAGCA GCAACTCAACGGCATCGACAACCTGCGTTATGTGTCCTCGGAAAGTAACTCCGACGGCAGCATGACCATCACCGCGACCTTCGAACAGGGCACCAGCTCC GATACGGCGCAGGTCCAGGTCCAGAACAAGCTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAGCAGGGTATCCGCGTGACCAAGGCCGTGA AGAACTTCCTGATGGTCATCGGCGTGGTGTCGCGCGACGGCAGCATGACCAAGGACGACTTGGCCAACTACATCGTGTCCAACCTGCAAGACCCTATCTC GCGTACCGCCGGTGTCGGTGACTTCCAGGTCTTCGGTGCCCAGTACGCCATGCGCATCTGGCTCGACCCGGCCAAGCTGAACAATTTCAACCTGACTCCG GTGGACGTCAAAAACGCCATTGCCGCGCAAAACGTCCAGATCTCGTCCGGCCAACTCGGCGGCTTGCCTGCCCTGCCCGGCCAGCAACTGAACGCCACCA TCATCGGCAAGACTCGTTTGCAGACCGCCGAGCAGTTCAAGGCGATTCTGCTCAAGGTCAACCCGGACGGCTCGCAAGTGCGCGTCGGCGATGTTGCCGA AGTGGGTCTGGGTGGTGAGAACTACAGCGTCAGCGCCCAGTTCAACGGCGCCCCGGCGTCGGGCCTGGCGGTAAAACTGGCCAACGGTGCCAACGCCCTC GACACGGCCAAGGCCCTGCGCAAGACCATCGACGACCTCAAGCCGTTCTTCCCGCAAGGCGTGGAAGTGGTGTTCCCGTACGACACCACGCCGGTGGTGA GCGAATCGATCAAGGGTGTGGTTGAAACCCTGGTCGAAGCGGTCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCGACCATCAT CACCACGATGACGGTGCCGGTGGTGTTGCTGGGTACCTTCGGGATCCTCGCGGCGTTCGGCTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAACGGGTGATGAGCGAAGAAGGCCTGTCACCCAAGGAAGCCACCAAGAAAT CCATGGGCCAGATCCAGGGCGCCCTGGTAGGTATCGCCCTGGTGCTTTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGTGGCTCCACGGGGGTGATCTA CAAGCAGTTCTCCATCACCATCGTCTCGGCCATGGCCTTGTCGGTCATGGTGGCCTTGATCTTCACCCCGGCCCTGTGCGCCACCATGCTCAAGGCGATC CCCAAGGGTGAGCACGGCACGCCGAAACGCGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGTGGCGTGCGCAGCTACGAGCGTGGTGTGGGCAATA TGCTCAAGCACAAGGCCCCGTACCTGCTGGCCTACGTGCTCATCGTGGTTGGCATGATCTGGCTGTTCACCCGCATCCCGACTGCGTTCCTGCCCGAAGA AGACCAGGGCGTACTGTTTGCCCAGGTACAAACGCCGGCGGGCTCCAGTGCCGAGCGTACCCAGGTGGTGGTGGACAAGATGCGCGAGTTCCTGTTGCGC CCCAGCAAGGACGGCGGTGAAGGCGATGCGGTGGCCTCGGTATTTACCGTGACCGGCTTCAACTTCGCCGGTCGTGGCCAGAGCTCCGGCATGGCGTTCA TCATGCTCAAGCCATGGGAAGAGCGTAACGCCGACAACAGCGTGTTCAAACTCGCGGCCCGCGCCCAGCAGCACTTCTTCACGTTCCGTGATGCGATGGT GTTCGCCTTTGCTCCGCCAGCGGTACTGGAGCTGGGTAACGCCACTGGTTTCGACGTGTTCCTGCAGGACCGTGCCGGCATTGGCCACGATAAGTTGATG CAAGCCCGTAACCAGTTCCTGGGAATGGCATCCCAAAGCAAGATCCTGTCCCAGGTGCGTCCAAACGGCCTGAACGACGAGCCGCAATACCAACTGGAAA TCGATGACGAGAAGGCCAGCGCGCTGGGCATCACCTTGTCGGACATCAACAACACCCTGTCGATTGCCCTGGGCAGTAGCTACGTGAACGACTTCATCGA CCGTGGTCGGGTGAAGAAGGTGTATGTACAGGGTCAACCCGGCGCTCGCATGAGCCCGGAAGACCTGAAGAAATGGTACGTGCGCAACAGCGCCGGGACC ATGGTGCCGTTCACAGCATTCGCCAAGGGCGAGTGGGTCTATGGCTCGCCGAAACTGGCCCGATACAACGGCGTGGAAGCGATGGAAATACTTGGCGCCC CCGCCCCGGGTTACTCCACTGGCGAAGCCATGGCCGAAGTCGAAGCCATCGCCAAGAAGCTGCCGGCCGGGGTTGGTATTTCCTGGACGGGCCTGTCCTA CGAGGAGCGCCTGTCGGGCTCCCAGGCACCTGCGTTGTACGCCCTGTCGCTGCTGATGGTGTTCCTGTGCCTGGCGGCGCTGTATGAAAGCTGGTCGATT CCGATCGCGGTCATGCTCGTGGTGCCGCTGGGGATCATCGGTGCCCTGATGGCGACCAGCCTGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTGGGCT TGTTGACAACCATCGGTTTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTTGCCAAGGAACTTCATGAGCAGGGCCGCACGCTGATGGAAGCCGCGAT CGAAGCCTGCAGGATGCGTCTGCGGCCGATCATCATGACGTCCCTGGCATTCATCCTCGGGGTAGTCCCGTTGGCCATCTCCACCGGTGCCGGTTCGGGC AGCCAGCACGCCATCGGTACCGGCGTGATTGGCGGTATGCTCACCGCTACCATCCTGGCAATCTTCTGGGTGCCATTGTTCTTCGTGACGGTGTCGTCAA TGGGTCGTCGCAAACCTATCGACCAGGACGACACTCCTGAAACTTCTAAAGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCGCTACTCTCCCTGACCATCGCCGCCGTCGTGCTCAGCGGTTGCTCGCTGATCCCCGACTATCAGCGGCCCGAAACACCGGTCGCGGCGCAATA CCCGCAAGGGCCGGCCTACGAGGCGGCCAATGCGCCCGGCCAGGCCGCCGCCGAGCAAGGCTGGAAGCAGTTTTTCCATGATCCGACCCTGCAACAGCTG ATCCAGGTCGCGCTGGAAAACAACCGCGACCTGCGCGTCGCGGCACTGAACATCGATGCCTATGCCGCGCAATACCGCATCCAGCGCGCGGACCTCTTCC CGGCGGTCTCGGCCACCGGCTCCGGCAGCCGCCAGCGGGTACCGGCACGGGCTTCGCAAAGCGGTGAAGCGGCCATCAGCAGCTCCTACTCGGCCACCCT GGGCATCAGCGCCTATGAACTGGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAGCAAGCGCTGCAAAGCTACTTCGCCACCGAAGAAGCCCGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTSS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGVVSRDGSMTKDDLANYIVSNLQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKNAIAAQNVQISSGQLGGLPALPGQQLNATIIGKTRLQTAEQFKAILLKVNPDGSQVRVGDVAEVGLGGENYSVSAQFNGAPASGLAVKLANGANAL DTAKALRKTIDDLKPFFPQGVEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAI PKGEHGTPKRGFFGWFNRNFDRGVRSYERGVGNMLKHKAPYLLAYVLIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDKMREFLLR PSKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADNSVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHDKLM QARNQFLGMASQSKILSQVRPNGLNDEPQYQLEIDDEKASALGITLSDINNTLSIALGSSYVNDFIDRGRVKKVYVQGQPGARMSPEDLKKWYVRNSAGT MVPFTAFAKGEWVYGSPKLARYNGVEAMEILGAPAPGYSTGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI PIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGAGSG SQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRKPIDQDDTPETSKEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site