Pseudomonas brassicacearum PP1_210F, P908_RS23920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTATGAAGCGGATCAATAATCTATTCAGGGCGTGGCTCCGACTTGTATAAGTGATCGATCCGGACCTCTGTCTAAAGGAACTGAATGAACAAGCTCTTT CTGGTATTGAGTGTCTTGGTGCTGGCAGCTTGCTCTACGAGTGCCAAGACCCACGCAGTGCGTGGTGTCAGTGGTATCGAGGTCGACTGCTCGGGGTTGG GTTCCGGCTGGGAGAAGTGCCACAAGAGAGCTGCAAGAGAGTGCAAGGGGGCTGGTTACAAGGTGATTACCCGATCCGACGATGCGAAGGATGAAGATCA GTATCCCTTTGGTTTCAATCCGGCTGGCTATCTGACTCGTACGATGCTGGTCATCTGTCGATAGCATCTCCCTGCTTGCGCGGAAAGAGGCAATAGGGGA GTCAAGAAGAATGTCAATACTTGGGCTGTTCAAATCCCTCCGGTCATGCTAAAACCTTTTCAAGCGATTTTCCTAGCTGCTTGAAAAAGAAGGGAAAAAT
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| DNA Sequence for Gene |
>P908_RS23920
ATGACGAAGTCGGAGTTGATCGAACGAATTGTCACCCATCAAGGGCTACTCTCATCCAAGGATGTGGAGCTGGCCATCAAGACTATGCTTGAGCAGATGT CCCAGTGCTTGGCGACTGGAGATCGCATCGAGATTCGCGGTTTCGGCAGTTTTTCCTTGCATTACCGCGCTCCGCGGGTAGGTCGCAATCCAAAGACCGG CCAGTCCGTCAGCCTAGACGGGAAGTTCGTCCCCCATTTCAAGCCGGGTAAAGAGCTCAGGGATCGGGTGAATGAGGAGGAGGGGGATGAGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGAGCCCCAAAACAGAGGAGTTCACATGCGGAACTTTAAACGCTTGGCCCTTGTCGTACTTGCGCTGCTCGTGGCCTCAGCTATCGTCCTGTTCGTGCT TGAAAATAACCAGTCGGTGGCACTGCTGTTTCTGGGCTGGTCAGCTCCGCAGCTCCCTGTCTCGGTTTTCGTGATCCTGGCGCTTCTCGCTGGTATGATG TTTGGACCGTTACTCGCATGGTTCGTGGGTGCGCGTCGACGATTGAAATAATGGATGTGTGAGCCCAGTAGTCTTGGTAAGGATCACTGTCTACAATTTT TCTGACTTTGGGTGCGTTTTGTTCGTATTTAATCTAACTCAGTTTAGGGCTGTATCCGCCGAGGCCTTGTCAGTCTTGCCTTTTAGAGCTTCCAGTTTCA CCTGGGGCGTAATGCCAAAAAAAGGAAGCGAGGCCGTACATGCAAAATAATCATGTTGATTTGCAGGGGGGCGATGAAATCGACCTGATGGAGCTTGCTC
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEGDEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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