Pseudomonas brassicacearum PP1_210F, P908_RS23910
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCAAGCCGGGTAAAGAGCTCAGGGATCGGGTGAATGAGGAGGAGGGGGATGAGCTCTGACAGAGCCCCAAAACAGAGGAGTTCACATGCGGAACTTTA AACGCTTGGCCCTTGTCGTACTTGCGCTGCTCGTGGCCTCAGCTATCGTCCTGTTCGTGCTTGAAAATAACCAGTCGGTGGCACTGCTGTTTCTGGGCTG GTCAGCTCCGCAGCTCCCTGTCTCGGTTTTCGTGATCCTGGCGCTTCTCGCTGGTATGATGTTTGGACCGTTACTCGCATGGTTCGTGGGTGCGCGTCGA CGATTGAAATAATGGATGTGTGAGCCCAGTAGTCTTGGTAAGGATCACTGTCTACAATTTTTCTGACTTTGGGTGCGTTTTGTTCGTATTTAATCTAACT CAGTTTAGGGCTGTATCCGCCGAGGCCTTGTCAGTCTTGCCTTTTAGAGCTTCCAGTTTCACCTGGGGCGTAATGCCAAAAAAAGGAAGCGAGGCCGTAC
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| DNA Sequence for Gene |
>P908_RS23910
ATGCAAAATAATCATGTTGATTTGCAGGGGGGCGATGAAATCGACCTGATGGAGCTTGCTCGCGGAATTTTCGTCCAAAAGTGGTTGATTCTGGTGGTCA CTCTTTTGGTCGCCATAGGTGCAACCGCCTATGCGTTCCTTAGCAAGCCTGTCTATGAGGCCAAGCTTTTTATCATTCCTCCCACTCAGAATGGTATTGC TGAGCTGAATTATGGTCGTGGGAAAAGCACGGAACTTGATCCTTATTCGATCAAGGACGTCTATGATGTCTTTGCCCGAAACCTCCAAGGCGAGTCCCTT CGACAAACCTTCTTCAATACAATCTATCTTCCGTCGCTTGATAAATCCCAGCGTGAGGCGCCTCTCGATCGTTTGTATGAGCGATTTTCTCGTGAGTTAA TGATCAAGGGGCCTGGCAGAGATACACCGGATCGTTTCTCGGTGACTGTGCAAAGTAACGACCCTGCACAGGCTACGGAGTGGGCGAAGGCTTACGTTCA GCGTGCGAGTGTGGCTGCCGAGTCGGAGCTGATTAAGAACGTTACGACCGAGGCTTCAGTAAGAGCGCGTAACTTGGAACAACGAATTGTCAGCTTGCGA GAAACTGCGCAACGGGTACGCGAGGACCGGATCCAACAGCTGCGTGAAGCGTTGCAGATCGCAAAGGCTATCGGCCTCACGACCCCTGTCGTGAATTCAA CGGCTGCAGTTGATATCACTGTGGATACGGGCAATAAATTAGATTATCAACGCGGCAGCAAGGCGCTCGCGGCCGAAGTCGAAGCGCTGGAGTCGAGGTC TTCGGATGATGCGTTCATCGGCGATTTGCGCTCGCTTCAGATGCGATATGGTTTTTATCGTAAGTTGAATGTCGATCCTGAAACTATTTCGGTTTATCGT CAGGATGGTGTTGTCGAGATACCAGAAAGCCCCATCAAGCCAAGGAAAATGCTGATCTTGGTGCTGGGAGTTGTCGGTGGGCTGATGCTGGGTGGTTTCT TGGCTTTGATCAGGTTTCTTATCCGTCGAAATGAACAGCGTCAGCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATGTTCTGGGGGGCAGTGCTCTCAGATAAGCAAGTGACTCGGCTGGGATGATAAGGTGAATGTATGTGCTCCGGCGCCCTTCACCTTTGCTCTCGAGGG GCTGAGTTGAAAAATGCAGCGTCAGCTGGCCGGCGGGCTGAAAATTGGTTTGCTGACGGTGCCCAAGCCGAGCTCTCAAAAGCTGTGACAACGTTCTCTC GATTCTTTGATGGATTGTTAGGCGAGCTCACTCAAAATTTGTACGTAGACATCAAAAAGCTATCATTTCAAAGTAGGAAAAATTTCCGTTATAGGTCGGA GATATCAAACATTTGAAAGATGACGCTTCTAGAGAGGGATACGATCAGCACTGTCCGAGAAAGCATGAACAGCTGGACGTCTGCAGATATAGTCCCTACC ATCCTAGCTAAAATCTGGTATCCGGTGTAGCGCAGACCCCGTCAGGACAAGCTTGCCGAGGAGCATCTGGTTTGGCAGGGTTATGCTTGTATGCGCCTGA
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| Amino Acid Sequence |
>chain-length determining protein
MQNNHVDLQGGDEIDLMELARGIFVQKWLILVVTLLVAIGATAYAFLSKPVYEAKLFIIPPTQNGIAELNYGRGKSTELDPYSIKDVYDVFARNLQGESL RQTFFNTIYLPSLDKSQREAPLDRLYERFSRELMIKGPGRDTPDRFSVTVQSNDPAQATEWAKAYVQRASVAAESELIKNVTTEASVRARNLEQRIVSLR ETAQRVREDRIQQLREALQIAKAIGLTTPVVNSTAAVDITVDTGNKLDYQRGSKALAAEVEALESRSSDDAFIGDLRSLQMRYGFYRKLNVDPETISVYR QDGVVEIPESPIKPRKMLILVLGVVGGLMLGGFLALIRFLIRRNEQRQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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