Pseudomonas brassicacearum PP1_210F, P908_RS17250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCACCATCACTCGTGGCGAGGTCTGCCTGCACTTGGGCGAGGGCGATTGCCGGGTGGCGGTGGTCAGCGGCTCGGCACAACTGCAACCCCTGCGCGGG CCATTGCTGAGCTTGGAAGCGGGCCAGCAGGTCAACATCCAGGATTCAGGCGCGGGGCCAGTGAAGGCGTTCGACGTGGCGCAGCTGGGTTGGCGTGACG GCGTATTGGTTGCGCAGGACCAGCCGCTGGGGCATTTCCTGCGGGAACTGAGCCGCTATCGCCCCGGGGTGTTGCGTTGGGACGAAACCCTGGAAGCCCT GCGAATCACTGGCAGCTTCCGCTTGGACAACACCGACCGAATCCTCACGCTGCTTGCGGCCAGCCTACCGCTGGACGTGCACATGCGCACTCGCTACTGG GTCACGTTGACGCTTCGCAAAAATATGGCCTGATGCCTGTCCCCTTTTTTTGTCTCGCTTGTCATTCAAGGCAACTGAACAAAAATGAGAGCGCTTTCCA
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| DNA Sequence for Gene |
>P908_RS17250
ATGTCCGCAGTTGCACCTTTGCGTTTGCGCCCGGCCTTTGCCGGCTGGCGTCCGCTGTTGAACCTGAGCCTCATGCTGAGCTTGAGCGCCAGCCCATTCT TTATCTCATCGAGCCTGGCCGAAGAAACCGACCGGCGCAGCTATCAGGTGCCGGCCGGCAGCCTCGGCGCAGCGTTGGCCCGGTTTGCCGGGCTGGCGGG CGTCAACCTGTCGGTGGATCCGGCCCTGGTAAGTGGTCGCAACAGCGCCGGGCTTTCGGGTGAGTTTGGCGTAGAGGAGGGGTTTGCCCGGCTGTTGTCG GGTTCGGGCCTGCAATTGCAAGCGGTGGGTGAGCAGGCCTATATCCTGACGCCGGCACCGGAAGGCGGCAGCCTGCAACTGGCACCCACCTCGATTCTAG GCGCCACGACGTCGACGGACAGCCCGGCGTATGCCGGTGGCCAGGTTGCTCGCCGTGGTTCGCAAGGCTTGCTGGGCTCGCGGGATTTCATGGAAACACC GTTCAGCATGACCACCTACACCAGCGCGGCGGTCAAGAACCAGCAGGCGCGCACCTTGGGCGACATGATCGCCAGCGACCCCTCGGTCCGCGCCACCAAC CCGGCGGGCGGACGCTTTGAGCAGTTCACCATTCGTGGTTTCAGCCTGTTCAACAGCGATGTTGCGTACAACGGTCTCTACGGCATCCTGCCGACCTACA CCATCGACATGGAAATGGCCGAACGCGTCGATATCCTCAAGGGCCCGAGCCAGCTCATCAACGGTATCTCGCCGCGGGGCAGCGTGGGCGGCGGGATCAA TGTGGTGCCCAAGCGTGCCACCGACAAGCCCATCACCTCGTTCACCGGCAGCTATGCCTCCAACAACCAACTGGGCGGTGCTGTGGATGTCGGTCGGCGC TTTGGCGAAGATGACAAGTTCGGGATTCGCTTCAATGGCGTGAAGCAGGCGGGCGACACCGAATGGGATCAACAGAGCGTGGACCGCGAGATGGCGGTGC TGGGCCTGGATTTTCGCGGTGAGCGCCTGCGATTCTCGACGGACATCGGCCACACCGAACGTAACACCGACGCGCCCCAGGAACGCGTGCAGGTGGGCGC CAATGCACAGGTTCCTCACGCCAGTGATGTGCGCGACAACTACGCCCAGTCCTGGAGCAAGGCGCGCACCAAGGACACCTTCGGCACCGTGAACGCTGAA TTCGACGTCAACGATTCCGTCATGCTGTATGGCGGTGTCGGAGCGCGTAAAAGCGAGCACGACTTCCTTCGGCACAACGTTTCGGTCACCAACGACGCGG GTGACTTCACCGTCCAGCCCCGAGACTTTACCCGCGACGAAAATGTCCGCACGGCCACAGCCGGGGTGCGCAACTGGTTCCATACCGGCCCGGTGAGCCA TGAGGTCAACCTGGCTGCCAGCTATTTCTACATGGACTTCGAAAATGGCGGCGCCCGTTACGCCAACGGTCGCAGCAACCTGTATGAACCGGTGCAGACC CCGGCGCCGAGCAACCCGACGCGACAGGACGATAAGGTCTACACCGAGAACCGCTTCAGTGGCGTGGCGTTGTCCGACACCCTGGGGCTGTTCGACGATC GCTTGCTGCTGACCCTCGGCGCTCGCTGGCAACGGGTGAAGGTTGACGACTGGACGAATAACGTCAAGGGCGACACTGCCTACGATGAGGAAAAGGTTTC ACCGTCGGGCGGCATCCTGTTCAAGGCGACGGACAAGTTGTCGCTGTATGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACGTCG GTGAACGAGGATGAGATTTTCCCGCCGTTCATCAGCCGTCAGGTCGAGGTGGGCGCCAAGTATGATGCCGGCCCATTCGCCGTCACCGCCGCGCTGTTTC GGATCAAGCAGCCGGCCTATGCGACCGACGCCACGACGCGTGTCTTCGGCCCGAACGGCAAGCGAGAAAACACCGGCGTGGAGTTGAGTGTGTTTGGCGA ACCGCTGAAGGGAACCCGTTTGCTCGGCGGCGTGATGTACATCGACAGCGAACTGACCCATACCACCAATGGCACCTTCGATGGCAACCGCGCCCCCGCC ACGCCGAAGTACAACGTCAACCTCGGTGCCGAATGGGACGTGCCGACGGTACAGGGCCTGACCCTGACCAGCCGGGGCATCTACTCCAGCTCGCAGTACC TGGACCAGTCCAACACCAAGGAAATCGATTCCTGGGAACGCTTCGACGTCGGCGCCCGCTACGCATTCAAGGTCGACGAGAAGAACGTCACCCTGCGGGC CAACATCGAAAACGTGGCAGACAAGCGCTACTGGAGTTCGGCCGGGGCGTCGGATGACAGTGAGGCCGGATTGACGTTGTCGACCCCGCGCACCTACCTG CTTTCCGCAACGGTGGATTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCAGGTGCCGCTCCAGGGAAGGAGCCGCCTGGGTTCAGATGTCGCGAAACAGATCGTGAGCATCCAGCAGTCGCCAGGCAATTTCGGGGCGTTTTTCC AGCCCACGGCGGATGGCGGCGGGAATCGACTGGCGAATCTTGCGGCACAGGCCGGGCTGGTCCTGGAATTCGATGGCGATGCCGCGCATGGTCCGCACTT CGTTATAGCCAGGCTCGACGCTCAGGCGGATCCCCAGGTTTTCGTACAGGCGTTGCTGCAGGCGCTGGAGTTCGTCGAGGCTCTGGATGTTCTCCAGGCG TTCAAGCAGGCGTTTTTCTTCCTGGCGATTCAAGCAAAGGATGCGCAGGTCGCTGCCAGGCGCTTGCAGCAAGGCATCACGGCCGCAATCGCAGACGCCG GGCGGGCAGGGGGGACGGATCGGAATCGACGCGGTCATGGGCTCCACAAAAATCTGCTGCACAACGAAACAGCGAGCTTATCGCCGGCCCAGGCAATGTG
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| Amino Acid Sequence |
>TonB-dependent receptor
MSAVAPLRLRPAFAGWRPLLNLSLMLSLSASPFFISSSLAEETDRRSYQVPAGSLGAALARFAGLAGVNLSVDPALVSGRNSAGLSGEFGVEEGFARLLS GSGLQLQAVGEQAYILTPAPEGGSLQLAPTSILGATTSTDSPAYAGGQVARRGSQGLLGSRDFMETPFSMTTYTSAAVKNQQARTLGDMIASDPSVRATN PAGGRFEQFTIRGFSLFNSDVAYNGLYGILPTYTIDMEMAERVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSFTGSYASNNQLGGAVDVGRR FGEDDKFGIRFNGVKQAGDTEWDQQSVDREMAVLGLDFRGERLRFSTDIGHTERNTDAPQERVQVGANAQVPHASDVRDNYAQSWSKARTKDTFGTVNAE FDVNDSVMLYGGVGARKSEHDFLRHNVSVTNDAGDFTVQPRDFTRDENVRTATAGVRNWFHTGPVSHEVNLAASYFYMDFENGGARYANGRSNLYEPVQT PAPSNPTRQDDKVYTENRFSGVALSDTLGLFDDRLLLTLGARWQRVKVDDWTNNVKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTS VNEDEIFPPFISRQVEVGAKYDAGPFAVTAALFRIKQPAYATDATTRVFGPNGKRENTGVELSVFGEPLKGTRLLGGVMYIDSELTHTTNGTFDGNRAPA TPKYNVNLGAEWDVPTVQGLTLTSRGIYSSSQYLDQSNTKEIDSWERFDVGARYAFKVDEKNVTLRANIENVADKRYWSSAGASDDSEAGLTLSTPRTYL LSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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