Pseudomonas brassicacearum PP1_210F, P908_RS16600

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGACAACCAGGTCAACCCGCAGACCGGCACCATCCGTGGTCGTGCCGTGTTCGACAACAAGGACGGTGCCTACACCCCAGGCCTGTATGCCCGCCTGAA ACTGGTGGGCAGCGGCACTTACGCCGCCGTGCTGATCAACGACGAAGCCGTCGGCACCGACCTGGGCAAGAAATTCGTGCTGGTGATGGACGCCGAGAAC AAGCCGGCCTACCGCGCCGTCGAACTGGGTCCGAAGATCGAAGGCCTGCGCATCGTGCGCAGCGGCCTGAGCAAGGACGACACCATCATCGTCAAGGGGC TGCAACGGGCTCGTCCGGGTGCACCGGTCACGCCTGAAACCGTGCCGATGGCCAGCGACGAAACCATTGCCGCCCTGGCACAACAACGTAAAGCGCTCGA AGCCAGCAACCTGCCCCAAGTCGCGCCATCCAAGGACGCGTCAGGGGCGGCAGGCAAATTGGCCGCTGCGACCCCACGCGGTTAAGGGACTGAATCCAAG
DNA Sequence for Gene
>P908_RS16600
ATGAAATTTTCCCAGTTCTTCATTTCGCGGCCGATCTTCGCAGCAGTGCTTTCGCTGCTGATCCTGATCGCCGGCGCCATCTCGCTGTTCCAATTGCCGA TCAGCGAATACCCGGAAGTCGTGCCGCCGACCGTGGTCGTGCGCGCCAACTTCCCGGGCGCCAACCCCAAGGTCATCGGCGAGACTGTTGCCGCGCCCCT GGAACAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAATCCACCGCTGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTCACCCGGACCGAGCCCAAGCTGCCGGAAGAAGTGACCCGGATCGGCATCACGGTGGACAAGG CGTCGCCCGACCTGACCATGGTCGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCCTGCTCAACATCAAGGATGA GCTGGCGCGCCTGGGTGGTGTGGGTGATGTGCAGCTGTTCGGCATGGGTGACTACTCCCTGCGAGTCTGGCTGGATCCGAACAAGACCGCCTCGCGCAAC CTGACCGCCACCGACGTGGTTACCGCGATCCGTGAACAGAACCGCCAGGTGGCGGCCGGCGCCCTGGGTGCACCGCCAGCGCCCAACGCCCAGGCTTTCC AGCTCTCGATCAACACCCAGGGTCGCCTGGTGAACGAGGAAGAGTTCGAGAACATCATCATTCGTTCCGGCGCCAACGGCGAGATCACTCGCCTGAAGGA TATCGCCCGGGTCGAACTGGGTTCCAGCCAATACGCCCTGCGCTCGCTGCTGGACAACCAGCCAGCAGTGGCGATCCCGATCTTCCAGCGTCCGGGCTCC AACGCCATCCAGATCTCCAACGACGTTCGCGAGAAGATGGAAGAGTTGAAGAAGGGCTTCCCGGCCGGGATGGACTACAGCATCGTCTATGACCCGACGA TCTTCGTCCGTGGCTCCATCGAGGCGGTGGTGCACACCCTGTTCGAAGCGCTGATTCTCGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATTCCATTGGTGGCGGTGCCGGTTTCGCTGATCGGTACATTCGCGGTGATGCACCTGTTCGGCTTCTCGTTGAACGCCCTCTCGCTGTTCGGC CTGGTACTGGCGATCGGTATCGTGGTGGACGACGCGATCGTGGTGGTGGAGAACGTCGAGCGAAACATCGAACTGGGGCTCACCCCGGTGGAGGCGACCA AGCGCGCCATGGGCGAAGTGACCGGCCCGATCATCGCCACCGCCCTGGTGCTGTGCGCGGTATTCGTTCCGGCGGCGTTCATCAGTGGCCTGACCGGGCA GTTCTATAAGCAGTTCGCCCTGACCATTGCCATCTCCACGGTGATTTCGGCCGTCAACTCCCTGACCCTGTCGCCAGCCCTGGCTGCGGTATTGCTCAAG GGTCATGACGCGCCCAAGGACCGTTTCTCCAAGTTCCTCGACAAGCTCTTCGGTGGCTGGTTGTTCCGTCCGTTCAACCGCTTCTTCGAGCGCGCCAGCC ACGGTTACGTGGGCACCGTCGCCCGAGTGATTCGTAGCAGCGGCATCGCCCTGGTGCTCTATGCGGGCCTGATGGTGTTGACCTTCTTCGGTTTCTCCAC CACCCCGACCGGTTTCGTGCCCGGCCAGGACAAGCAATACCTGGTGGCCTTCGCCCAATTGCCGGACGCCGCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCGGACCTGGCCCTCAAGCAACCGGGCGTTGAAAGTGCCGTGGCCTTCCCGGGCCTGTCGATCAACGGTTTCACCAACAGCCCGAACGCCG GCATCGTGTTCGTGACCCTCAAGCCCTTCGACGAACGCAAGGACCCGAGCATGTCGGCCGGCGCCATCGCCGGTGCCTTGAACGGCCAGTACGCCGGGAT CCAGGAAGCCTACATGGCGATCTTCCCACCGCCGCCGGTACAGGGCCTGGGTACGATCGGTGGTTTCCGCCTGCAAATCGAAGACCGGGGCAACCTGGGC TACGACGAGCTGTACAAAGAAACCATGAACATCATCACCAAGAGCCGCAGCGTGCCGGAACTGGCCGGGTTGTTCACCAGCTACACCGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGTGAAAAAGCCAAGACCCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGCTGTATGC CAACGACTTCAACCGCTTCGGTCGCACCTACCAGGTCAACGTCCAGGCCGAGCAGCAGTTCCGTCTCGAGTCGGACCAGATCGGCCAGCTCAAGGTGCGC AACAACCGTGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGGCCAGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCCGCCGCCCCGGGCTACAGCTCCGGCCAGGCTGAAAAAGCCATCGAGAAACTGCTCAAGGACGAACTGCCCAACGGCATGACCTACGA GTGGACCGACCTGACCTACCAGCAGATCCTCTCGGGCAACACCGCACTGTTCGTGTTCCCGCTCTGCGTATTGCTGGCGTTCCTGGTGCTCGCGGCACAG TACGAAAGCTGGAGCCTGCCATTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATTACCGGGGTGATTCTCTCCGGCGGCGACAACAACA TCTTTACCCAGATCGGCTTGATCGTACTGGTGGGGCTTGCCTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGATAAACAGCTCGAAGGCATGAA CCCGCTGGCGGCGGTGCTGGAAGCGTGCCGCCTGCGTCTGCGGCCAATCCTGATGACCTCCTTCGCCTTCATCATGGGAGTGGTGCCCCTGGTGTTCTCC AGTGGTGCCGGTGCGGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGCGTGACCTTCTTCGGCCTGCTGCTCACCCCTGTGTTCT ATGTACTGATCCGCAACTTCGTCGAGCGCAGCGAGGCCCGCAAAGCGGCCCGGGCTTTGAAACTGGAGGCGCAACAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTTTGAAAGCGTTCGTGCCGAGCTTGCTGGTGTTGGCCTTGAGTGCCTGCGCCGTGGGCCCGGACTACAAGGCCCCGCAAACGGAGGCGGCGAATATCAC CACCGCCACCGACGGCGCCGCCGGCCAGAAGAATTTCGACCGTGCCCGGTTCGAAGGCATCTGGTGGCAGCAGTTCGACGACCCGACCCTTAACGCGTTG GTGACCCGTTCCCTGGAAGGCAACCGCGAGTTGCGCGTGGCCTTCGCCCGTTTGCGGGCCGCCCGGGCGATTCGCGATGACGCCAGCAATGACGCCATGC CGACCATCACCAGCCGTGCCAGCAGCAATCTGGGCAAAGGCCAGATCCCGGGACAGACCACCGACCGGGTCAATACCGAGCGTTACGACCTGGGCCTGGA CATGGCCTGGGAACTGGACTTGTTCGGACGCATCCAGCGCAACCTGGAAGCCACCGATGCCAATCAGCAGGCGATCGAAGCCGATCTCTATCAGTTGCAG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MKFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNAQAFQLSINTQGRLVNEEEFENIIIRSGANGEITRLKDIARVELGSSQYALRSLLDNQPAVAIPIFQRPGS NAIQISNDVREKMEELKKGFPAGMDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLTPVEATKRAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAVNSLTLSPALAAVLLK GHDAPKDRFSKFLDKLFGGWLFRPFNRFFERASHGYVGTVARVIRSSGIALVLYAGLMVLTFFGFSTTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIITKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNRGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQLEGMNPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERSEARKAARALKLEAQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site