Pseudomonas brassicacearum PP1_210F, P908_RS16090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCACCCTCGCGCACCGCCCGGGTCAAGGGCCCGTCCTGCCACCAGGTGCCCTGGGCGCCGATCAGGTGACGGCCCACCAGGTCGGCCGCGCTCAAGT CATCGTGGCAGGCCACGGTGTACAGCGGCAGTTTCAGGCGGTGGGCCATGTGTTGGACGAAACGGGTCTTGCCGCAGCCGGTCGGGCCTTTGATCAGTAC CGGCATGCCGTGATGCCAGGCCTGTTCGAACATCGCCTGCTCGTTGTCCTGGGGTTGATAAAAGGGTTCATCGGGGTGCTGCAAAGTGTGGATAGCGTTC ATGGCAAGGCCTGATCAGACAACACGATTGCAGGCCACGCTACGGTGCCCTGCGACAACCTGGCAAGGGCTGCGGCCGGCAAACTTGATCGCCGTCAAGC GGCTAACCACCGGCCTGGGCATAGCCTTGCACCGCACCAAGAACCTGCGCGCCGAACGTCAATTACAGCGCAGCGCGGGTCACGCCTGAGGAGAAATGGA
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| DNA Sequence for Gene |
>P908_RS16090
ATGCTGATCAGCCACAAAAAATCGTGGGCCCTGCGGGTCACGGCGCTGTGTACAGCGCTGGCCGCCCCCCACGCCTTCGCCGACCAAACCGCTGCGCCGG AACAACCCCGCGTGGTCAAGACCGAAGGTGCGCCCGACCTGAGCCAGGCCGACTTCGACACGGCCAAGGAAATCTACTTCCAGCGCTGCGCCGGTTGCCA CGGTGTGCTTCGCAAAGGCGCCACCGGCAAGCCGCTGACACCCGACATCACCCAATCGCGCGGCCAGGCCTACCTGGAGGCGCTGATCACCTACGGCTCG GCCGCCGGCATGCCGAACTGGGGCACGTCCAATGCCTTGACCAAAGACCAGATCACGGTGATGGCCAAGTTCATCCAGCACACCCCACCGACCCCACCGG AATGGGGCATGGCGGAAACCCGCAAGACCTGGAAACTGCTGGTCAAACCCGAAGACCGGCCGACCAAGCAGATCAGCACCCTCAACCTGCAGAACCTGTT CTCGGTGACCCTGCGCGACGACGGCAAGATTGCCCTGATCGACGGCGACAGCAAGAAGATCGTCAAGCTGATCGACACCGGTTATGCGGTGCACATCTCA CGCATCTCGGCGTCGGGCCGCTACCTGCTGGTGATCGGCCGGGACGCCAAGATCGACATGATCGACCTGTGGCCGAAGGAGCCGACCAAGGTCGCGGAAA TCAAGGTGGGCATCGAAGCGCGCTCGGTGGAGACTTCCAAGTTCAAAGGCTACGAAGACAAGTACACCATCGCCGGCTCGTACTGGCCGCCGCAGTTCAC CATCATGGACGGCGAGACCCTGGAGCCCAAGCAGATCGTCTCGACGCGCGGCATGACCGTCGACACCCAGCAATACCATCCCGAGCCTCGCGTCGCGGCC ATCATCGCCTCCCACGAATGGCCGGAGTTCATCGTCAACGTCAAGGAAACCGGCAAGGTGATGCTGGTCAATTACCAGGACATCAAGAACCTCACCATCA CCAGCATCGACGCCGCGCCGTTCCTGCATGACGGCGGTTGGGACAGCAGCCATCGCTACTTCATGACGGCCGCCAACAACTCCAACAAGGTCGCGGTGAT CGACTCCAAGGAGCGCAAGCTCACCGCCCTGGTGGACGTTGGCAAGACCCCGCACCCGGGACGCGGCGCCAACTTCAACCACCCACTCTACGGACCGGTC TGGGCCACCAGCCACTTGGGCGATGCCGGGGTTTCGCTGATCGGCACCGACCCGGTCAATCACCCGCAATACGCCTGGAAACAGGTCAGTACGCTCCAGG GCCAGGGCGGCGGCTCGCTGTTCATCAAGACTCACCCCGCGTCCCGTCACCTGTATGTCGACACCACCCTCAGCCCCGACGCCAAGCTCAGCCAGTCGGT AGCGGTGTTCGACATCGACAAGCTCGACGCCGGCTACACCGTGCTGCCGATTGCCGAGTACGCCGGTATCAAGAAAGGCGCGCTGCGAGTGGTGCAACCG GAATACAACAAGGCCGGTGACGAGGTCTGGTTCTCGGTCTGGAGTGGCCAGGAAGACGAGTCGGCGCTGGTGGTGATCGACGACAAGACCCTCAAGGTCA AGAACGTGATCAAGGACAAGCGCCTGATCACCCCGACCGGGAAATTCAACGTCTACAACACCCAACACGACATCTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCATCAATAAGAGGAAAAACCATGAAGCCTATTCTGATTGCCTTGGCCTTGACTGCCGCCTACAGCCTGCCGGCGTTGGCCCAAGACGGCCCGACGC TGTTCAAGAGCAAGCCCTGCGCGGCCTGCCACTCCATCGACACCAAGGTGGTTGGCCCGGCACTCAAGGACGTCGCGGCGAAAAACGCCAGCGTCCCTGG AGCGCAAGACCTGCTCGCCAAGCACATCAAGGAAGGTACGCAAGGCAACTGGGGACCGATGCCGATGCCGGCCAACCCCGTGACGGAAGAAGAAGCCAAG ATCCTGGCTGCGTGGGTCTTGACCCTTAAATAACGCTCAAGGAGCACATCCCTGTGGCGAGGGGATTTATGTGGGAGCAAGGCTTGCCCGCGATGGGGGC GATGCAGTCTTTCAGAAATCAAGGCGGCTGTTTCGCGAGCAAGCTTTGCTCCCACATAAATCCCCTCACCACAGGAGCCACGCCCAACTTTATTTCTTGA
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| Amino Acid Sequence |
>nitrite reductase
MLISHKKSWALRVTALCTALAAPHAFADQTAAPEQPRVVKTEGAPDLSQADFDTAKEIYFQRCAGCHGVLRKGATGKPLTPDITQSRGQAYLEALITYGS AAGMPNWGTSNALTKDQITVMAKFIQHTPPTPPEWGMAETRKTWKLLVKPEDRPTKQISTLNLQNLFSVTLRDDGKIALIDGDSKKIVKLIDTGYAVHIS RISASGRYLLVIGRDAKIDMIDLWPKEPTKVAEIKVGIEARSVETSKFKGYEDKYTIAGSYWPPQFTIMDGETLEPKQIVSTRGMTVDTQQYHPEPRVAA IIASHEWPEFIVNVKETGKVMLVNYQDIKNLTITSIDAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKERKLTALVDVGKTPHPGRGANFNHPLYGPV WATSHLGDAGVSLIGTDPVNHPQYAWKQVSTLQGQGGGSLFIKTHPASRHLYVDTTLSPDAKLSQSVAVFDIDKLDAGYTVLPIAEYAGIKKGALRVVQP EYNKAGDEVWFSVWSGQEDESALVVIDDKTLKVKNVIKDKRLITPTGKFNVYNTQHDIY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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