Pseudomonas brassicacearum PP1_210F, P908_RS15350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAAAGAATTGCCACTGGTGGTCGGCATTCTGGCCGACCTCTCAGGCAAGCCACTGGACCCGCTGCCCAAGCTCAATGAGCGGCGCTTTACCGAAATCGA TCGGGATAATTTCAACGAGGTACTCGCCTCCATCTCCCCCCGCGCCACGCTCCAGGTGAACAACACCCTCAGCGGCGACGACAGCAAGCTCAACATCGAA CTCAACTTCCGTCACATCGACGACTTCGACCCGGTCAAGGTCGTGGAGCAGGTCACGCCGCTGCGTCGGTTGTTCGAAGCGCGCCAACGCCTGCGGGACC TGTTGACCAAACTCGATGGCAACGACGACCTGGACAAGCTGCTGCGCGACGTGATCGCCAACACCGAGGGCCTGCAGGAAATCAAGTCGGCGCGACCCCA GGACGTACCGCCGGAGCTGCCCGCCGTGGCCGCCAACGATGACCCTGCCCCGGCCGAACCACAGGCCTGATCGCGCGCATCATTCAAGGGAGATAACGCC
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| DNA Sequence for Gene |
>P908_RS15350
ATGCCTGCTTCATCCAGCGCTCAAACCAGCGAGAGCACGACCCAGACCCTGTCCCTGCTGGACAAGATCATCGCCGAAGGCCGCATGGCCCACGACGACA GCCAGCAAGATTACGCCCGCGACATGCTGGCCGAATTCGCCACCCAGGTCCTCGACGAAGGCATGGCCATCGACAAGGACACCGTGGCGATGATCAACGA CCGCATCAGCCAGATCGACCAGTTGATCAGCGCCCAGCTAAACGAAGTGCTGCACCACCCCGACCTGCAGAAACTCGAAGCCTCCTGGCGCGGCCTGCAC CTGCTGGTGCAGAACACCGAGACCAGCACCCGGCTCAAATTGCGCCTGCTCAACGTCACCCAGAAAGAACTGCAGAACGATCTGGAAAAAGCCGTCGAAT TCGACCAGAGCGCGCTGTTCAAGAAAATCTACGAGGAAGAATACGGCACCTTCGGCGGGCATCCGTTCAGTCTGCTGGTGGGCGACTACACCTTTGGCCG GCATCCCCAGGACATCGGCCTGCTGGAAAAACTCTCGAACGTCGCCGCCGCCGCACATGCCCCGTTCATTGCCGCGGCCAGCCCGCGGTTGTTCGACATG ACCAGCTTCACCGAACTGGCGATCCCCAGGGACCTGTCGAAGATTTTCGAAAGCCAGGAGCTGATCAAGTGGCGCGCCTTCCGTGAAAGCGAAGACTCGC GCTACGTATCCCTGGTGCTGCCGCACTTCCTGCTGCGCCTGCCATACGGCCCGGACACGCTGCCGGTGGAAGGCATCAACTACGTCGAAGACGTCAACGG CACCGACCACAGCAAATACCTGTGGGGCAACGCCGCCTGGACCCTGGCGCAACGCATCACCGAAGCCTTCGCCAAATATGGCTGGTGCGCAGCCATTCGC GGGGCCGAGGGCGGTGGCGCGGTCGAAGGCCTGCCGGCCCATACGTTCCGCACCAGTTCCGGGGATCTGTCGCTCAAATGCCCGACCGAAGTGGCAATCA CCGACCGCCGTGAAAAGGAACTCAACGACCTGGGCTTCATCTCCCTGTGCCACAAGAAAAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACCACCAA CAAGGCCAAGGCCTACAACACCAACGAGGCCAACGCCAACGCGCGGATCTCGGCGATGTTGCCATACGTGCTCGCGGCCTCGCGCTTCGCCCATTACCTG AAGGTGATCATGCGTGACAAGGTCGGCAGTTTCATGACCCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCCGACTACGTGCTGATCAACGACA ACGCGCCGCAAGAGATCAAGGCGCAGTACCCGTTGCGCGAAGCACGGGTGGACGTGACGGAAGTGGCCGGCAAGCCAGGGGCCTACAAGGCCACGGTGTT CCTGCGGCCGCACTTCCAGCTGGAGGAGCTGACCGCCTCGATCCGCCTGGTGGCGACCCTGCCGCCACCGGTAGCTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCCCTTGGCGAGGGAGCAAGCTCCCACTGCCCACTGCAGGAGCTGACTGTAGGAGCTGACGAGTGCAACGAGGCTGCGATCTTTCCAAGGACGCTTGA GTCCCAAGCGAAAGATCAAAAGATCGCAGCCTTCGGCAGCTCCTACAGGTACCGGGCACTACCTCATTCGTCTTCTTCAGGAGTTCCACATAATGGATGC AATCATTCTCGACCTCGGCGGCGACATCAAGGGCGACAGCCTGCTGGAGGGTTTCACGGACAAGATCGAGGTCATGTCCTACAGCCACAACGTGGCGATG CAAGTCACCAACGACGTCAGCAACTCGGAGCGCACCTCCGGCCGACCCCACATCGGCGAGTTCACCCTGACCAAATTCGTCGACAGCTCCACCCCCACCC TCAATGAGTATTGCTGCGCCGGCAAGCCGATCCCGCAAGCCGTCATCACCGTTGGCCGCAATGCCGCCGAGGGCAGCGGCAAACTCATGCCGTTCATCAT
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| Amino Acid Sequence |
>type VI secretion protein EvpB
MPASSSAQTSESTTQTLSLLDKIIAEGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDQLISAQLNEVLHHPDLQKLEASWRGLH LLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLVGDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDM TSFTELAIPRDLSKIFESQELIKWRAFRESEDSRYVSLVLPHFLLRLPYGPDTLPVEGINYVEDVNGTDHSKYLWGNAAWTLAQRITEAFAKYGWCAAIR GAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKAKAYNTNEANANARISAMLPYVLAASRFAHYL KVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYKATVFLRPHFQLEELTASIRLVATLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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